/* * Jalview - A Sequence Alignment Editor and Viewer * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.gui; import jalview.datamodel.*; import java.awt.*; import java.awt.event.*; import javax.swing.*; /** * DOCUMENT ME! * * @author $author$ * @version $Revision$ */ public class ScalePanel extends JPanel implements MouseMotionListener, MouseListener { protected int offy = 4; /** DOCUMENT ME!! */ public int width; protected AlignViewport av; AlignmentPanel ap; boolean stretchingGroup = false; int min; //used by mouseDragged to see if user int max; //used by mouseDragged to see if user // wants to delete columns public ScalePanel(AlignViewport av, AlignmentPanel ap) { this.av = av; this.ap = ap; addMouseListener(this); addMouseMotionListener(this); } /** * DOCUMENT ME! * * @param evt DOCUMENT ME! */ public void mousePressed(MouseEvent evt) { int x = (evt.getX() / av.getCharWidth()) + av.getStartRes(); final int res; if(av.hasHiddenColumns) res = av.getColumnSelection().adjustForHiddenColumns(x); else res = x; min = res; max = res; if(reveal != null) { av.getColumnSelection().revealHiddenColumns(reveal[0], av); reveal = null; return; } if (av.getColumnSelection().contains(res)) { if( SwingUtilities.isRightMouseButton(evt)) { JPopupMenu pop = new JPopupMenu(); JMenuItem item = new JMenuItem("Hide Columns"); item.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { av.getColumnSelection().hideColumns(res, av); } }); pop.add(item); pop.show(this, evt.getX(), evt.getY()); } else { av.getColumnSelection().removeElement(res); ap.annotationPanel.removeEditableColumn(res); } } else { av.getColumnSelection().addElement(res); SequenceGroup sg = new SequenceGroup(); for (int i = 0; i < av.alignment.getSequences().size(); i++) { sg.addSequence(av.alignment.getSequenceAt(i), false); } sg.setStartRes(res); sg.setEndRes(res); av.setSelectionGroup(sg); } ap.repaint(); } /** * DOCUMENT ME! * * @param evt DOCUMENT ME! */ public void mouseReleased(MouseEvent evt) { int res = (evt.getX() / av.getCharWidth()) + av.getStartRes(); if(av.hasHiddenColumns) res = av.getColumnSelection().adjustForHiddenColumns(res); if (av.getColumnSelection() != null) { for (int i = 0; i < av.getColumnSelection().size(); i++) { ap.annotationPanel.addEditableColumn(av.getColumnSelection() .columnAt(i)); } } if (!stretchingGroup) { ap.repaint(); return; } SequenceGroup sg = av.getSelectionGroup(); if (res > sg.getStartRes()) { sg.setEndRes(res); } else if (res < sg.getStartRes()) { sg.setStartRes(res); } stretchingGroup = false; ap.repaint(); } /** * DOCUMENT ME! * * @param evt DOCUMENT ME! */ public void mouseDragged(MouseEvent evt) { int res = (evt.getX() / av.getCharWidth()) + av.getStartRes(); if(av.hasHiddenColumns) res = av.getColumnSelection().adjustForHiddenColumns(res); if (res < min) { min = res; } if (res > max) { max = res; } SequenceGroup sg = av.getSelectionGroup(); if (sg != null) { stretchingGroup = true; if (!av.getColumnSelection().contains(res)) { av.getColumnSelection().addElement(res); } if (res > sg.getStartRes()) { sg.setEndRes(res); } else if (res < sg.getStartRes()) { sg.setStartRes(res); } for (int i = min; i <= max; i++) { if ((i < sg.getStartRes()) || (i > sg.getEndRes())) { av.getColumnSelection().removeElement(i); ap.annotationPanel.removeEditableColumn(res); } else { av.getColumnSelection().addElement(i); } } ap.repaint(); } } public void mouseEntered(MouseEvent evt){} public void mouseExited(MouseEvent evt){} public void mouseClicked(MouseEvent evt){} public void mouseMoved(MouseEvent evt) { if(!av.hasHiddenColumns) return; int res = (evt.getX() / av.getCharWidth()) + av.getStartRes(); res = av.getColumnSelection().adjustForHiddenColumns(res); reveal = null; for(int i=0; i= startx) && (sel <= endx)) { gg.fillRect((sel - startx) * av.charWidth, 0, av.charWidth, getHeight()); } } // Draw the scale numbers gg.setColor(Color.black); int scalestartx = (startx / 10) * 10; FontMetrics fm = gg.getFontMetrics(av.getFont()); int y = av.charHeight - fm.getDescent(); if ((scalestartx % 10) == 0) { scalestartx += 5; } for (int i = scalestartx; i < endx; i += 5) { if ((i % 10) == 0) { gg.drawString(String.valueOf(av.getColumnSelection().adjustForHiddenColumns(i)), (i - startx - 1) * av.charWidth, y); gg.drawLine((int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)), y + 2, (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)), y + (fm.getDescent() * 2)); } else { gg.drawLine((int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)), y + fm.getDescent(), (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)), y + (fm.getDescent() * 2)); } } if (av.hasHiddenColumns) { gg.setColor(Color.blue); int res; for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size(); i++) { res = av.getColumnSelection().findHiddenRegionPosition( i )-startx; gg.fillPolygon(new int[] { res*av.charWidth - 4, res*av.charWidth + 4, res*av.charWidth }, new int[] { y-av.charHeight/2 , y-av.charHeight/2 , y + 8 }, 3); } if (reveal != null && reveal[0] > startx && reveal[0] < endx) { gg.drawString("Reveal Columns", reveal[0] * av.charWidth, 0); } } } }