package jalview.gui; import jalview.jbgui.GUserDefinedColours; import jalview.datamodel.*; import jalview.io.*; import javax.swing.*; import java.awt.*; import java.awt.event.*; import javax.swing.event.*; import jalview.schemes.*; import java.io.*; import java.util.*; public class UserDefinedColours extends GUserDefinedColours implements ChangeListener { AlignmentPanel ap; SequenceGroup seqGroup; JButton selectedButton; Vector oldColours = new Vector(); ColourSchemeI oldColourScheme; JInternalFrame frame; public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg) { super(); frame = new JInternalFrame(); frame.setContentPane(this); Desktop.addInternalFrame(frame, "User Defined Colours", 450,530, false ); if(System.getProperty("os.name").startsWith("Mac")) frame.setSize(450,560); if(sg!=null) frame.setTitle( frame.getTitle()+ " ("+sg.getName()+")"); colorChooser.getSelectionModel().addChangeListener(this); this.ap = ap; seqGroup = sg; if (seqGroup != null) oldColourScheme = seqGroup.cs; else oldColourScheme = ap.av.getGlobalColourScheme(); for (int i = 0; i < 20; i++) makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i]) + "", ResidueProperties.aa[i]); makeButton("B", "B"); makeButton("Z", "Z"); makeButton("X", "X"); makeButton("Gap", "'.','-',' '"); if(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")!=null) { loadColours(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")); } } public void stateChanged(ChangeEvent evt) { if(selectedButton!=null) selectedButton.setBackground( colorChooser.getColor() ); } public void colourButtonPressed(MouseEvent e) { selectedButton = (JButton)e.getSource(); colorChooser.setColor(selectedButton.getBackground()); } void makeButton(String label, String aa) { final JButton button = new JButton(); Color col = Color.white; try{ col = oldColourScheme.findColour(aa, -1); }catch(Exception ex){} button.setBackground( col ); oldColours.addElement( col ); button.setText( label ); button.setForeground( col.darker().darker().darker() ); button.setFont(new java.awt.Font("Verdana", 1, 10)); button.addMouseListener(new java.awt.event.MouseAdapter() { public void mouseClicked(MouseEvent e) { colourButtonPressed(e); } }); buttonPanel.add(button, null); } protected void okButton_actionPerformed(ActionEvent e) { applyButton_actionPerformed(null); try{ frame.setClosed(true); }catch(Exception ex){} } protected void applyButton_actionPerformed(ActionEvent e) { Color [] newColours = new Color[24]; for(int i=0; i<24; i++) { JButton button = (JButton)buttonPanel.getComponent(i); newColours[i] = button.getBackground(); } UserColourScheme ucs = new UserColourScheme(newColours); ucs.setThreshold(0); if(seqGroup!=null) { seqGroup.cs = ucs; ap.repaint(); } else ap.alignFrame.changeColour(ucs); } protected void loadbutton_actionPerformed(ActionEvent e) { JalviewFileChooser chooser = new JalviewFileChooser( jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]{"jc"}, new String[]{"Jalview User Colours"}, "Jalview User Colours"); chooser.setFileView(new jalview.io.JalviewFileView()); chooser.setDialogTitle("Load colour scheme"); chooser.setToolTipText("Load"); int value = chooser.showOpenDialog(this); if (value == JalviewFileChooser.APPROVE_OPTION) { File choice = chooser.getSelectedFile(); jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice.getParent()); jalview.bin.Cache.setProperty("USER_DEFINED_COLOUR", choice.getPath()); Color[] colors = loadColours(choice.getAbsolutePath()); for (int i = 0; i < colors.length; i++) { JButton button = (JButton) buttonPanel.getComponent(i); button.setBackground(colors[i]); } } } public static UserColourScheme loadDefaultColours() { if(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")!=null) return loadDefaultColours(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")); else return null; } public static UserColourScheme loadDefaultColours(String file) { UserColourScheme ucs = null; Color cols[] = loadColours(file); if(cols!=null) { ucs = new UserColourScheme(cols); ucs.setThreshold(0); } return ucs; } static Color [] loadColours(String file) { Color [] newColours=null; try { InputStreamReader in = new InputStreamReader( new FileInputStream(file), "UTF-8"); jalview.binding.JalviewUserColours ucs = new jalview.binding.JalviewUserColours(); ucs = (jalview.binding.JalviewUserColours)ucs.unmarshal(in); newColours = new Color[ucs.getColourCount()]; for (int i = 0; i < 24; i++) newColours[i] = new Color(Integer.parseInt(ucs.getColour(i).getRGB(), 16)); } catch (Exception ex) {System.out.println("Error loading UserColourFile "+file);} return newColours; } protected void savebutton_actionPerformed(ActionEvent e) { JalviewFileChooser chooser = new JalviewFileChooser( jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]{"jc"}, new String[]{"Jalview User Colours"}, "Jalview User Colours"); chooser.setFileView(new jalview.io.JalviewFileView()); chooser.setDialogTitle("Save colour scheme"); chooser.setToolTipText("Save"); int value = chooser.showSaveDialog(this); if (value == JalviewFileChooser.APPROVE_OPTION) { String choice = chooser.getSelectedFile().getPath(); jalview.bin.Cache.setProperty("USER_DEFINED_COLOUR", choice); jalview.binding.JalviewUserColours ucs = new jalview.binding.JalviewUserColours(); try{ PrintWriter out = new PrintWriter(new OutputStreamWriter( new FileOutputStream(choice), "UTF-8")); for(int i=0; i<24; i++) { JButton button = (JButton)buttonPanel.getComponent(i); jalview.binding.Colour col = new jalview.binding.Colour(); col.setName(button.getText()); col.setRGB( jalview.util.Format.getHexString( button.getBackground() )); ucs.addColour(col); } ucs.marshal(out); out.close(); } catch(Exception ex) {ex.printStackTrace();} } } protected void cancelButton_actionPerformed(ActionEvent e) { Color [] newColours = new Color[24]; for(int i=0; i<24; i++) { newColours[i] = (Color)oldColours.elementAt(i); buttonPanel.getComponent(i).setBackground(newColours[i]); } UserColourScheme ucs = new UserColourScheme( newColours ); if (seqGroup != null) seqGroup.cs = ucs; else ap.av.setGlobalColourScheme(ucs); ap.repaint(); try{ frame.setClosed(true); }catch(Exception ex){} } }