package jalview.gui; import jalview.jbgui.GUserDefinedColours; import jalview.datamodel.*; import jalview.io.*; import javax.swing.*; import java.awt.*; import java.awt.event.*; import javax.swing.event.*; import jalview.schemes.*; import java.io.*; import java.util.*; public class UserDefinedColours extends GUserDefinedColours implements ChangeListener { AlignmentPanel ap; SequenceGroup seqGroup; JButton selectedButton; Vector oldColours = new Vector(); ColourSchemeI oldColourScheme; JInternalFrame frame; public UserDefinedColours(JInternalFrame f, AlignmentPanel ap, SequenceGroup sg) { super(); colorChooser.getSelectionModel().addChangeListener(this); this.ap = ap; frame = f; seqGroup = sg; if (seqGroup != null) oldColourScheme = seqGroup.cs; else oldColourScheme = ap.av.getGlobalColourScheme(); for (int i = 0; i < 20; i++) makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i]) + "", ResidueProperties.aa[i]); makeButton("B", "B"); makeButton("Z", "Z"); makeButton("X", "X"); makeButton("'.','-',' '", "-"); if(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")!=null) { loadColour(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")); } } public void stateChanged(ChangeEvent evt) { if(selectedButton!=null) selectedButton.setBackground( colorChooser.getColor() ); } public void colourButtonPressed(MouseEvent e) { selectedButton = (JButton)e.getSource(); colorChooser.setColor(selectedButton.getBackground()); } void makeButton(String label, String aa) { final JButton button = new JButton(); Color col = Color.white; try{ col = oldColourScheme.findColour(aa, -1); }catch(Exception ex){} button.setBackground( col ); oldColours.addElement( col ); button.setText( label ); button.setForeground( col.darker().darker().darker() ); button.setFont(new java.awt.Font("Verdana", 1, 10)); button.addMouseListener(new java.awt.event.MouseAdapter() { public void mouseClicked(MouseEvent e) { colourButtonPressed(e); } }); buttonPanel.add(button); } protected void okButton_actionPerformed(ActionEvent e) { applyButton_actionPerformed(null); try{ frame.setClosed(true); }catch(Exception ex){} } protected void applyButton_actionPerformed(ActionEvent e) { UserColourScheme ucs = new UserColourScheme(); Color [] newColours = new Color[24]; for(int i=0; i<24; i++) { JButton button = (JButton)buttonPanel.getComponent(i); newColours[i] = button.getBackground(); } ucs.setThreshold(0); ucs.setColourScheme( newColours ); if(seqGroup!=null) seqGroup.cs = ucs; else ap.av.setGlobalColourScheme(ucs); ap.RefreshPanels(); } protected void loadbutton_actionPerformed(ActionEvent e) { JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY"), new String[]{".jvuc"}, "Jalview User Colours"); chooser.setFileView(new jalview.io.JalviewFileView()); chooser.setDialogTitle("Load colour scheme"); chooser.setToolTipText("Load"); int value = chooser.showOpenDialog(this); if (value == JalviewFileChooser.APPROVE_OPTION) { String choice = chooser.getSelectedFile().getPath(); jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice); loadColour(choice); } } void loadColour(String file) { try { BufferedReader in = new BufferedReader(new FileReader(file)); for (int i = 0; i < 24; i++) { JButton button = (JButton) buttonPanel.getComponent(i); Color c = new Color(Integer.parseInt(in.readLine())); button.setBackground(c); } } catch (Exception ex) {} } protected void savebutton_actionPerformed(ActionEvent e) { JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY")); chooser.setFileView(new jalview.io.JalviewFileView()); chooser.setDialogTitle("Save colour scheme"); chooser.setToolTipText("Save"); int value = chooser.showSaveDialog(this); if (value == JalviewFileChooser.APPROVE_OPTION) { String choice = chooser.getSelectedFile().getPath(); jalview.bin.Cache.setProperty("USER_DEFINED_COLOUR", choice); try{ PrintWriter out = new PrintWriter(new FileWriter(choice)); for(int i=0; i<24; i++) { JButton button = (JButton)buttonPanel.getComponent(i); out.println(button.getBackground().getRGB() + ""); } out.close(); } catch(Exception ex) {ex.printStackTrace();} } } protected void cancelButton_actionPerformed(ActionEvent e) { UserColourScheme ucs = new UserColourScheme(); Color [] newColours = new Color[24]; for(int i=0; i<24; i++) { newColours[i] = (Color)oldColours.elementAt(i); buttonPanel.getComponent(i).setBackground(newColours[i]); } ucs.setColourScheme( newColours ); if (seqGroup != null) seqGroup.cs = ucs; else ap.av.setGlobalColourScheme(ucs); ap.RefreshPanels(); } }