package jalview.io.xdb.genbank;

public class GenBankReference
{
  private int order;

  private int begin;

  private int end;

  private String descriptor;

  private String authors;

  private String title;

  private String journal;

  private String pubmed;

  private String medline;

  private String consortia;

  private String remark;

  public GenBankReference()
  {
    super();
  }

  public String getDescriptor()
  {
    return descriptor;
  }

  public void setDescriptor(String descriptor)
  {
    this.descriptor = descriptor;
  }

  public String getAuthors()
  {
    return authors;
  }

  public void setAuthors(String authors)
  {
    this.authors = authors;
  }

  public String getTitle()
  {
    return title;
  }

  public void setTitle(String title)
  {
    this.title = title;
  }

  public String getJournal()
  {
    return journal;
  }

  public void setJournal(String journal)
  {
    this.journal = journal;
  }

  public String getPubmed()
  {
    return pubmed;
  }

  public void setPubmed(String pubmed)
  {
    this.pubmed = pubmed;
  }

  public int getOrder()
  {
    return order;
  }

  public void setOrder(int order)
  {
    this.order = order;
  }

  public int getBegin()
  {
    return begin;
  }

  public void setBegin(int begin)
  {
    this.begin = begin;
  }

  public int getEnd()
  {
    return end;
  }

  public void setEnd(int end)
  {
    this.end = end;
  }

  public String getMedline()
  {
    return medline;
  }

  public void setMedline(String medline)
  {
    this.medline = medline;
  }

  public String getConsortia()
  {
    return consortia;
  }

  public void setConsortia(String consortia)
  {
    this.consortia = consortia;
  }

  public String getRemark()
  {
    return remark;
  }

  public void setRemark(String remark)
  {
    this.remark = remark;
  }

  public String toString()
  {
    // References has the following format
    // REFERENCE 1 (bases 1 to 1976)
    // AUTHORS Spritz,R.A., DeRiel,J.K., Forget,B.G. and Weissman,S.M.
    // TITLE Complete nucleotide sequence of the human delta-globin gene
    // JOURNAL Cell 21 (3), 639-646 (1980)
    // PUBMED 7438204

    StringBuffer buf = new StringBuffer();
    buf.append("REFERENCE   ").append(this.getOrder()).append("  (bases ")
            .append(this.getBegin()).append(" to ").append(this.getEnd())
            .append(")\n");
    if (this.getAuthors() != null)
      buf.append("  AUTHORS   ").append(this.getAuthors()).append("\n");
    if (this.getTitle() != null)
      buf.append("  TITLE     ").append(this.getTitle()).append("\n");
    if (this.getJournal() != null)
      buf.append("  JOURNAL   ").append(this.getJournal()).append("\n");
    if (this.getPubmed() != null)
      buf.append("  PUBMED   ").append(this.getPubmed()).append("\n");
    ;
    if (this.getMedline() != null)
      buf.append("  MEDLINE   ").append(this.getMedline()).append("\n");
    ;
    if (this.getRemark() != null)
      buf.append("  REMARK   ").append(this.getRemark()).append("\n");
    ;
    if (this.getConsortia() != null)
      buf.append("  CONSRTM   ").append(this.getConsortia()).append("\n");
    ;
    return buf.toString();
  }

}