package jalview.io.xdb.genbank;

import java.util.Vector;

/**
 * A line like the following: 1 aatgaaggtt catttttcat tctcacaaac taatgaaacc
 * ctgcttatct taaaccaacc will be mapped as: id: 1 sequences: {"aatgaaggtt",
 * "catttttcat", "tctcacaaac", "taatgaaacc", "ctgcttatct", "taaaccaacc"} Each
 * sequence has 8 nucleotides long
 * 
 * @author darolmar
 * 
 */
public class GenBankSequence
{
  // Initial position
  private int id;

  // Sequences in that line
  private Vector<String> sequences;

  public GenBankSequence()
  {
    super();
    sequences = new Vector<String>();
  }

  public int getId()
  {
    return id;
  }

  public void setId(int id)
  {
    this.id = id;
  }

  public Vector<String> getSequences()
  {
    return sequences;
  }

  public void setSequences(Vector<String> sequences)
  {
    this.sequences = sequences;
  }

  public String getSequencesAsString()
  {
    StringBuffer sb = new StringBuffer();
    for (String seq : sequences)
      sb.append(seq).append(" ");
    return sb.toString();
  }

  public String toString()
  {
    StringBuffer sb = new StringBuffer().append("        ").append(this.id);
    for (String seq : sequences)
      sb.append(" ").append(seq);
    sb.append("\n");
    return sb.toString();
  }

}