package jalview.json.binding.biojson.v1;
import java.util.ArrayList;
import com.github.reinert.jjschema.Attributes;
public class SequenceGrpPojo
{
@Attributes(
required = false,
description = "The Colour Scheme applied to the Sequence Group")
private String colourScheme;
@Attributes(
required = true,
description = "The name assigned to the seqGroup")
private String groupName;
@Attributes(
required = false,
description = "Serial version identifier for the seqGroup object model")
private String description;
@Attributes(
required = false,
description = "Determines if the seqGroup border should be visible or not")
private boolean displayBoxes;
@Attributes(
required = false,
description = "Determines if the texts of the group is displayed or not")
private boolean displayText;
@Attributes(
required = false,
description = "Determines if the residues text for the group is coloured")
private boolean colourText;
@Attributes(
required = false,
description = "Boolean value indicating whether residues should only be shown
that are different from current reference or consensus sequence")
private boolean showNonconserved;
@Attributes(
required = true,
description = "The index of the group’s first residue in the alignment space")
private int startRes;
@Attributes(
required = true,
description = "The index of the group’s last residue in the alignment space")
private int endRes;
@Attributes(
required = true,
minItems = 1,
uniqueItems = true,
description = "An array of the unique id's for the sequences belonging to the group")
private ArrayList sequenceRefs = new ArrayList();
public String getColourScheme()
{
return colourScheme;
}
public void setColourScheme(String colourScheme)
{
this.colourScheme = colourScheme;
}
public String getGroupName()
{
return groupName;
}
public void setGroupName(String groupName)
{
this.groupName = groupName;
}
public String getDescription()
{
return description;
}
public void setDescription(String description)
{
this.description = description;
}
public boolean isDisplayBoxes()
{
return displayBoxes;
}
public void setDisplayBoxes(boolean displayBoxes)
{
this.displayBoxes = displayBoxes;
}
public boolean isDisplayText()
{
return displayText;
}
public void setDisplayText(boolean displayText)
{
this.displayText = displayText;
}
public boolean isColourText()
{
return colourText;
}
public void setColourText(boolean colourText)
{
this.colourText = colourText;
}
public boolean isShowNonconserved()
{
return showNonconserved;
}
public void setShowNonconserved(boolean showNonconserved)
{
this.showNonconserved = showNonconserved;
}
public int getStartRes()
{
return startRes;
}
public void setStartRes(int startRes)
{
this.startRes = startRes;
}
public int getEndRes()
{
return endRes;
}
public void setEndRes(int endRes)
{
this.endRes = endRes;
}
public ArrayList getSequenceRefs()
{
return sequenceRefs;
}
public void setSequenceRefs(ArrayList sequenceRefs)
{
this.sequenceRefs = sequenceRefs;
}
}