package jalview.json.binding.v1;

import java.util.ArrayList;
import java.util.List;

public class AlignmentPojo
{
  private String svid = "1.0";

  private List<SequencePojo> seqs = new ArrayList<SequencePojo>();

  private List<AlignmentAnnotationPojo> alignAnnotation = new ArrayList<AlignmentAnnotationPojo>();

  private List<SequenceGrpPojo> seqGroups = new ArrayList<SequenceGrpPojo>();

  private List<SequenceFeaturesPojo> seqFeatures = new ArrayList<SequenceFeaturesPojo>();

  private JalviewSettingsPojo jalviewSettings;

  public AlignmentPojo()
  {
  }

  public List<SequencePojo> getSeqs()
  {
    return seqs;
  }

  public void setSeqs(ArrayList<SequencePojo> seqs)
  {
    this.seqs = seqs;
  }

  public JalviewSettingsPojo getJalviewSettings()
  {
    return jalviewSettings;
  }

  public void setJalviewSettings(JalviewSettingsPojo jalviewSettings)
  {
    this.jalviewSettings = jalviewSettings;
  }

  public List<AlignmentAnnotationPojo> getAlignAnnotation()
  {
    return alignAnnotation;
  }

  public void setAlignAnnotation(
          List<AlignmentAnnotationPojo> alignAnnotation)
  {
    this.alignAnnotation = alignAnnotation;
  }

  public List<SequenceGrpPojo> getSeqGroups()
  {
    return seqGroups;
  }

  public void setSeqGroups(List<SequenceGrpPojo> seqGroups)
  {
    this.seqGroups = seqGroups;
  }

  public List<SequenceFeaturesPojo> getSeqFeatures()
  {
    return seqFeatures;
  }

  public void setSeqFeatures(List<SequenceFeaturesPojo> seqFeatures)
  {
    this.seqFeatures = seqFeatures;
  }

  public String getSvid()
  {
    return svid;
  }
}