/*******************************************************************************
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
* Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*******************************************************************************/
/*
* This class was automatically generated with
* Castor 1.1, using an XML
* Schema.
* $Id$
*/
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
/**
* Class AlcodMap.
*
* @version $Revision$ $Date$
*/
public class AlcodMap implements java.io.Serializable {
//--------------------------/
//- Class/Member Variables -/
//--------------------------/
/**
* internal jalview id for the dnasq for this mapping.
*
*/
private java.lang.String _dnasq;
/**
* a Mapping entry and an associated protein sequence
*
*/
private jalview.schemabinding.version2.Mapping _mapping;
//----------------/
//- Constructors -/
//----------------/
public AlcodMap() {
super();
}
//-----------/
//- Methods -/
//-----------/
/**
* Returns the value of field 'dnasq'. The field 'dnasq' has
* the following description: internal jalview id for the dnasq
* for this mapping.
*
*
* @return the value of field 'Dnasq'.
*/
public java.lang.String getDnasq(
) {
return this._dnasq;
}
/**
* Returns the value of field 'mapping'. The field 'mapping'
* has the following description: a Mapping entry and an
* associated protein sequence
*
*
* @return the value of field 'Mapping'.
*/
public jalview.schemabinding.version2.Mapping getMapping(
) {
return this._mapping;
}
/**
* Method isValid.
*
* @return true if this object is valid according to the schema
*/
public boolean isValid(
) {
try {
validate();
} catch (org.exolab.castor.xml.ValidationException vex) {
return false;
}
return true;
}
/**
*
*
* @param out
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
*/
public void marshal(
final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, out);
}
/**
*
*
* @param handler
* @throws java.io.IOException if an IOException occurs during
* marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
*/
public void marshal(
final org.xml.sax.ContentHandler handler)
throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, handler);
}
/**
* Sets the value of field 'dnasq'. The field 'dnasq' has the
* following description: internal jalview id for the dnasq for
* this mapping.
*
*
* @param dnasq the value of field 'dnasq'.
*/
public void setDnasq(
final java.lang.String dnasq) {
this._dnasq = dnasq;
}
/**
* Sets the value of field 'mapping'. The field 'mapping' has
* the following description: a Mapping entry and an associated
* protein sequence
*
*
* @param mapping the value of field 'mapping'.
*/
public void setMapping(
final jalview.schemabinding.version2.Mapping mapping) {
this._mapping = mapping;
}
/**
* Method unmarshal.
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @return the unmarshaled
* jalview.schemabinding.version2.AlcodMap
*/
public static jalview.schemabinding.version2.AlcodMap unmarshal(
final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
return (jalview.schemabinding.version2.AlcodMap) Unmarshaller.unmarshal(jalview.schemabinding.version2.AlcodMap.class, reader);
}
/**
*
*
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
*/
public void validate(
)
throws org.exolab.castor.xml.ValidationException {
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
validator.validate(this);
}
}