/*******************************************************************************
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview.
* If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
******************************************************************************/
/*
* This class was automatically generated with
* Castor 1.1, using an XML
* Schema.
* $Id$
*/
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
/**
* Class Alcodon.
*
* @version $Revision$ $Date$
*/
public class Alcodon implements java.io.Serializable
{
// --------------------------/
// - Class/Member Variables -/
// --------------------------/
/**
* Field _pos1.
*/
private long _pos1;
/**
* keeps track of state for field: _pos1
*/
private boolean _has_pos1;
/**
* Field _pos2.
*/
private long _pos2;
/**
* keeps track of state for field: _pos2
*/
private boolean _has_pos2;
/**
* Field _pos3.
*/
private long _pos3;
/**
* keeps track of state for field: _pos3
*/
private boolean _has_pos3;
// ----------------/
// - Constructors -/
// ----------------/
public Alcodon()
{
super();
}
// -----------/
// - Methods -/
// -----------/
/**
*/
public void deletePos1()
{
this._has_pos1 = false;
}
/**
*/
public void deletePos2()
{
this._has_pos2 = false;
}
/**
*/
public void deletePos3()
{
this._has_pos3 = false;
}
/**
* Returns the value of field 'pos1'.
*
* @return the value of field 'Pos1'.
*/
public long getPos1()
{
return this._pos1;
}
/**
* Returns the value of field 'pos2'.
*
* @return the value of field 'Pos2'.
*/
public long getPos2()
{
return this._pos2;
}
/**
* Returns the value of field 'pos3'.
*
* @return the value of field 'Pos3'.
*/
public long getPos3()
{
return this._pos3;
}
/**
* Method hasPos1.
*
* @return true if at least one Pos1 has been added
*/
public boolean hasPos1()
{
return this._has_pos1;
}
/**
* Method hasPos2.
*
* @return true if at least one Pos2 has been added
*/
public boolean hasPos2()
{
return this._has_pos2;
}
/**
* Method hasPos3.
*
* @return true if at least one Pos3 has been added
*/
public boolean hasPos3()
{
return this._has_pos3;
}
/**
* Method isValid.
*
* @return true if this object is valid according to the schema
*/
public boolean isValid()
{
try
{
validate();
} catch (org.exolab.castor.xml.ValidationException vex)
{
return false;
}
return true;
}
/**
*
*
* @param out
* @throws org.exolab.castor.xml.MarshalException
* if object is null or if any SAXException is thrown during
* marshaling
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
*/
public void marshal(final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException
{
Marshaller.marshal(this, out);
}
/**
*
*
* @param handler
* @throws java.io.IOException
* if an IOException occurs during marshaling
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException
* if object is null or if any SAXException is thrown during
* marshaling
*/
public void marshal(final org.xml.sax.ContentHandler handler)
throws java.io.IOException,
org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException
{
Marshaller.marshal(this, handler);
}
/**
* Sets the value of field 'pos1'.
*
* @param pos1
* the value of field 'pos1'.
*/
public void setPos1(final long pos1)
{
this._pos1 = pos1;
this._has_pos1 = true;
}
/**
* Sets the value of field 'pos2'.
*
* @param pos2
* the value of field 'pos2'.
*/
public void setPos2(final long pos2)
{
this._pos2 = pos2;
this._has_pos2 = true;
}
/**
* Sets the value of field 'pos3'.
*
* @param pos3
* the value of field 'pos3'.
*/
public void setPos3(final long pos3)
{
this._pos3 = pos3;
this._has_pos3 = true;
}
/**
* Method unmarshal.
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException
* if object is null or if any SAXException is thrown during
* marshaling
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
* @return the unmarshaled jalview.schemabinding.version2.Alcodo
*/
public static jalview.schemabinding.version2.Alcodon unmarshal(
final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException,
org.exolab.castor.xml.ValidationException
{
return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
jalview.schemabinding.version2.Alcodon.class, reader);
}
/**
*
*
* @throws org.exolab.castor.xml.ValidationException
* if this object is an invalid instance according to the schema
*/
public void validate() throws org.exolab.castor.xml.ValidationException
{
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
validator.validate(this);
}
}