/*******************************************************************************
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
* Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*******************************************************************************/
/*
* This class was automatically generated with
* Castor 1.1, using an XML
* Schema.
* $Id$
*/
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
/**
* Class AnnotationElement.
*
* @version $Revision$ $Date$
*/
public class AnnotationElement implements java.io.Serializable {
//--------------------------/
//- Class/Member Variables -/
//--------------------------/
/**
* Field _position.
*/
private int _position;
/**
* keeps track of state for field: _position
*/
private boolean _has_position;
/**
* Field _colour.
*/
private int _colour;
/**
* keeps track of state for field: _colour
*/
private boolean _has_colour;
/**
* Field _displayCharacter.
*/
private java.lang.String _displayCharacter;
/**
* Field _description.
*/
private java.lang.String _description;
/**
* Field _secondaryStructure.
*/
private java.lang.String _secondaryStructure;
/**
* Field _value.
*/
private float _value;
/**
* keeps track of state for field: _value
*/
private boolean _has_value;
//----------------/
//- Constructors -/
//----------------/
public AnnotationElement() {
super();
}
//-----------/
//- Methods -/
//-----------/
/**
*/
public void deleteColour(
) {
this._has_colour= false;
}
/**
*/
public void deletePosition(
) {
this._has_position= false;
}
/**
*/
public void deleteValue(
) {
this._has_value= false;
}
/**
* Returns the value of field 'colour'.
*
* @return the value of field 'Colour'.
*/
public int getColour(
) {
return this._colour;
}
/**
* Returns the value of field 'description'.
*
* @return the value of field 'Description'.
*/
public java.lang.String getDescription(
) {
return this._description;
}
/**
* Returns the value of field 'displayCharacter'.
*
* @return the value of field 'DisplayCharacter'.
*/
public java.lang.String getDisplayCharacter(
) {
return this._displayCharacter;
}
/**
* Returns the value of field 'position'.
*
* @return the value of field 'Position'.
*/
public int getPosition(
) {
return this._position;
}
/**
* Returns the value of field 'secondaryStructure'.
*
* @return the value of field 'SecondaryStructure'.
*/
public java.lang.String getSecondaryStructure(
) {
return this._secondaryStructure;
}
/**
* Returns the value of field 'value'.
*
* @return the value of field 'Value'.
*/
public float getValue(
) {
return this._value;
}
/**
* Method hasColour.
*
* @return true if at least one Colour has been added
*/
public boolean hasColour(
) {
return this._has_colour;
}
/**
* Method hasPosition.
*
* @return true if at least one Position has been added
*/
public boolean hasPosition(
) {
return this._has_position;
}
/**
* Method hasValue.
*
* @return true if at least one Value has been added
*/
public boolean hasValue(
) {
return this._has_value;
}
/**
* Method isValid.
*
* @return true if this object is valid according to the schema
*/
public boolean isValid(
) {
try {
validate();
} catch (org.exolab.castor.xml.ValidationException vex) {
return false;
}
return true;
}
/**
*
*
* @param out
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
*/
public void marshal(
final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, out);
}
/**
*
*
* @param handler
* @throws java.io.IOException if an IOException occurs during
* marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
*/
public void marshal(
final org.xml.sax.ContentHandler handler)
throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, handler);
}
/**
* Sets the value of field 'colour'.
*
* @param colour the value of field 'colour'.
*/
public void setColour(
final int colour) {
this._colour = colour;
this._has_colour = true;
}
/**
* Sets the value of field 'description'.
*
* @param description the value of field 'description'.
*/
public void setDescription(
final java.lang.String description) {
this._description = description;
}
/**
* Sets the value of field 'displayCharacter'.
*
* @param displayCharacter the value of field 'displayCharacter'
*/
public void setDisplayCharacter(
final java.lang.String displayCharacter) {
this._displayCharacter = displayCharacter;
}
/**
* Sets the value of field 'position'.
*
* @param position the value of field 'position'.
*/
public void setPosition(
final int position) {
this._position = position;
this._has_position = true;
}
/**
* Sets the value of field 'secondaryStructure'.
*
* @param secondaryStructure the value of field
* 'secondaryStructure'.
*/
public void setSecondaryStructure(
final java.lang.String secondaryStructure) {
this._secondaryStructure = secondaryStructure;
}
/**
* Sets the value of field 'value'.
*
* @param value the value of field 'value'.
*/
public void setValue(
final float value) {
this._value = value;
this._has_value = true;
}
/**
* Method unmarshal.
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @return the unmarshaled
* jalview.schemabinding.version2.AnnotationElement
*/
public static jalview.schemabinding.version2.AnnotationElement unmarshal(
final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
return (jalview.schemabinding.version2.AnnotationElement) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationElement.class, reader);
}
/**
*
*
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
*/
public void validate(
)
throws org.exolab.castor.xml.ValidationException {
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
validator.validate(this);
}
}