/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see
* Note: Just in case the collection contents are changing in another thread, * we pass a 0-length Array of the correct type into the API call. This way we * know that the Array returned is of exactly the correct length. * * @return this collection as an Array */ public jalview.schemabinding.version2.PdbentryItem[] getPdbentryItem() { jalview.schemabinding.version2.PdbentryItem[] array = new jalview.schemabinding.version2.PdbentryItem[0]; return (jalview.schemabinding.version2.PdbentryItem[]) this._items .toArray(array); } /** * Method getPdbentryItemCount. * * @return the size of this collection */ public int getPdbentryItemCount() { return this._items.size(); } /** * Returns the value of field 'type'. * * @return the value of field 'Type'. */ public java.lang.String getType() { return this._type; } /** * Method isValid. * * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; } /** * * * @param out * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); } /** * * * @param handler * @throws java.io.IOException * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); } /** */ public void removeAllPdbentryItem() { this._items.clear(); } /** * Method removePdbentryItem. * * @param vPdbentryItem * @return true if the object was removed from the collection. */ public boolean removePdbentryItem( final jalview.schemabinding.version2.PdbentryItem vPdbentryItem) { boolean removed = _items.remove(vPdbentryItem); return removed; } /** * Method removePdbentryItemAt. * * @param index * @return the element removed from the collection */ public jalview.schemabinding.version2.PdbentryItem removePdbentryItemAt( final int index) { java.lang.Object obj = this._items.remove(index); return (jalview.schemabinding.version2.PdbentryItem) obj; } /** * Sets the value of field 'file'. * * @param file * the value of field 'file'. */ public void setFile(final java.lang.String file) { this._file = file; } /** * Sets the value of field 'id'. * * @param id * the value of field 'id'. */ public void setId(final java.lang.String id) { this._id = id; } /** * * * @param index * @param vPdbentryItem * @throws java.lang.IndexOutOfBoundsException * if the index given is outside the bounds of the collection */ public void setPdbentryItem(final int index, final jalview.schemabinding.version2.PdbentryItem vPdbentryItem) throws java.lang.IndexOutOfBoundsException { // check bounds for index if (index < 0 || index >= this._items.size()) { throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{ "setPdbentryItem", Integer.valueOf(index).toString(), Integer.valueOf((this._items.size() - 1)).toString() })); } this._items.set(index, vPdbentryItem); } /** * * * @param vPdbentryItemArray */ public void setPdbentryItem( final jalview.schemabinding.version2.PdbentryItem[] vPdbentryItemArray) { // -- copy array _items.clear(); for (int i = 0; i < vPdbentryItemArray.length; i++) { this._items.add(vPdbentryItemArray[i]); } } /** * Sets the value of field 'type'. * * @param type * the value of field 'type'. */ public void setType(final java.lang.String type) { this._type = type; } /** * Method unmarshal. * * @param reader * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @return the unmarshaled jalview.schemabinding.version2.Pdbentry */ public static jalview.schemabinding.version2.Pdbentry unmarshal( final java.io.Reader reader) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (jalview.schemabinding.version2.Pdbentry) Unmarshaller .unmarshal(jalview.schemabinding.version2.Pdbentry.class, reader); } /** * * * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); } }