/*
 * This class was automatically generated with
 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
 * Schema.
 * $Id$
 */

package jalview.schemabinding.version2;

//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/

import java.util.*;

import org.exolab.castor.xml.*;

/**
 * Class Sequence.
 *
 * @version $Revision$ $Date$
 */
public class Sequence
    extends jalview.schemabinding.version2.SequenceType implements java.io.
    Serializable
{

  //--------------------------/
  //- Class/Member Variables -/
  //--------------------------/

  /**
   * Field _DBRefList
   */
  private java.util.Vector _DBRefList;

  //----------------/
  //- Constructors -/
  //----------------/

  public Sequence()
  {
    super();
    _DBRefList = new Vector();
  } //-- jalview.schemabinding.version2.Sequence()

  //-----------/
  //- Methods -/
  //-----------/

  /**
   * Method addDBRef
   *
   *
   *
   * @param vDBRef
   */
  public void addDBRef(jalview.schemabinding.version2.DBRef vDBRef)
      throws java.lang.IndexOutOfBoundsException
  {
    _DBRefList.addElement(vDBRef);
  } //-- void addDBRef(jalview.schemabinding.version2.DBRef)

  /**
   * Method addDBRef
   *
   *
   *
   * @param index
   * @param vDBRef
   */
  public void addDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
      throws java.lang.IndexOutOfBoundsException
  {
    _DBRefList.insertElementAt(vDBRef, index);
  } //-- void addDBRef(int, jalview.schemabinding.version2.DBRef)

  /**
   * Method enumerateDBRef
   *
   *
   *
   * @return Enumeration
   */
  public java.util.Enumeration enumerateDBRef()
  {
    return _DBRefList.elements();
  } //-- java.util.Enumeration enumerateDBRef()

  /**
   * Method getDBRef
   *
   *
   *
   * @param index
   * @return DBRef
   */
  public jalview.schemabinding.version2.DBRef getDBRef(int index)
      throws java.lang.IndexOutOfBoundsException
  {
    //-- check bounds for index
    if ( (index < 0) || (index > _DBRefList.size()))
    {
      throw new IndexOutOfBoundsException();
    }

    return (jalview.schemabinding.version2.DBRef) _DBRefList.elementAt(index);
  } //-- jalview.schemabinding.version2.DBRef getDBRef(int)

  /**
   * Method getDBRef
   *
   *
   *
   * @return DBRef
   */
  public jalview.schemabinding.version2.DBRef[] getDBRef()
  {
    int size = _DBRefList.size();
    jalview.schemabinding.version2.DBRef[] mArray = new jalview.schemabinding.
        version2.DBRef[size];
    for (int index = 0; index < size; index++)
    {
      mArray[index] = (jalview.schemabinding.version2.DBRef) _DBRefList.
          elementAt(index);
    }
    return mArray;
  } //-- jalview.schemabinding.version2.DBRef[] getDBRef()

  /**
   * Method getDBRefCount
   *
   *
   *
   * @return int
   */
  public int getDBRefCount()
  {
    return _DBRefList.size();
  } //-- int getDBRefCount()

  /**
   * Method isValid
   *
   *
   *
   * @return boolean
   */
  public boolean isValid()
  {
    try
    {
      validate();
    }
    catch (org.exolab.castor.xml.ValidationException vex)
    {
      return false;
    }
    return true;
  } //-- boolean isValid()

  /**
   * Method marshal
   *
   *
   *
   * @param out
   */
  public void marshal(java.io.Writer out)
      throws org.exolab.castor.xml.MarshalException,
      org.exolab.castor.xml.ValidationException
  {

    Marshaller.marshal(this, out);
  } //-- void marshal(java.io.Writer)

  /**
   * Method marshal
   *
   *
   *
   * @param handler
   */
  public void marshal(org.xml.sax.ContentHandler handler)
      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
      org.exolab.castor.xml.ValidationException
  {

    Marshaller.marshal(this, handler);
  } //-- void marshal(org.xml.sax.ContentHandler)

  /**
   * Method removeAllDBRef
   *
   */
  public void removeAllDBRef()
  {
    _DBRefList.removeAllElements();
  } //-- void removeAllDBRef()

  /**
   * Method removeDBRef
   *
   *
   *
   * @param index
   * @return DBRef
   */
  public jalview.schemabinding.version2.DBRef removeDBRef(int index)
  {
    java.lang.Object obj = _DBRefList.elementAt(index);
    _DBRefList.removeElementAt(index);
    return (jalview.schemabinding.version2.DBRef) obj;
  } //-- jalview.schemabinding.version2.DBRef removeDBRef(int)

  /**
   * Method setDBRef
   *
   *
   *
   * @param index
   * @param vDBRef
   */
  public void setDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
      throws java.lang.IndexOutOfBoundsException
  {
    //-- check bounds for index
    if ( (index < 0) || (index > _DBRefList.size()))
    {
      throw new IndexOutOfBoundsException();
    }
    _DBRefList.setElementAt(vDBRef, index);
  } //-- void setDBRef(int, jalview.schemabinding.version2.DBRef)

  /**
   * Method setDBRef
   *
   *
   *
   * @param DBRefArray
   */
  public void setDBRef(jalview.schemabinding.version2.DBRef[] DBRefArray)
  {
    //-- copy array
    _DBRefList.removeAllElements();
    for (int i = 0; i < DBRefArray.length; i++)
    {
      _DBRefList.addElement(DBRefArray[i]);
    }
  } //-- void setDBRef(jalview.schemabinding.version2.DBRef)

  /**
   * Method unmarshal
   *
   *
   *
   * @param reader
   * @return Object
   */
  public static java.lang.Object unmarshal(java.io.Reader reader)
      throws org.exolab.castor.xml.MarshalException,
      org.exolab.castor.xml.ValidationException
  {
    return (jalview.schemabinding.version2.Sequence) Unmarshaller.unmarshal(
        jalview.schemabinding.version2.Sequence.class, reader);
  } //-- java.lang.Object unmarshal(java.io.Reader)

  /**
   * Method validate
   *
   */
  public void validate()
      throws org.exolab.castor.xml.ValidationException
  {
    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
        Validator();
    validator.validate(this);
  } //-- void validate()

}