/*
* Jalview - A Sequence Alignment Editor and Viewer
* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
*/
package jalview.schemes;

public class ColourSchemeProperty {
    public static final int CLUSTAL = 0;
    public static final int BLOSUM = 1;
    public static final int PID = 2;
    public static final int ZAPPO = 3;
    public static final int HYDROPHOBIC = 4;
    public static final int HELIX = 5;
    public static final int STRAND = 6;
    public static final int TURN = 7;
    public static final int BURIED = 8;
    public static final int NUCLEOTIDE = 9;
    public static final int USER_DEFINED = 10;
    public static final int NONE = 11;

    public static int getColourIndexFromName(String name) {
        int ret = 11;

        if (name.equalsIgnoreCase("Clustal")) {
            ret = CLUSTAL;
        } else if (name.equalsIgnoreCase("Blosum62")) {
            ret = BLOSUM;
        } else if (name.equalsIgnoreCase("% Identity")) {
            ret = PID;
        } else if (name.equalsIgnoreCase("Zappo")) {
            ret = ZAPPO;
        } else if (name.equalsIgnoreCase("Hydrophobic")) {
            ret = HYDROPHOBIC;
        } else if (name.equalsIgnoreCase("Helix Propensity")) {
            ret = HELIX;
        } else if (name.equalsIgnoreCase("Strand Propensity")) {
            ret = STRAND;
        } else if (name.equalsIgnoreCase("Turn Propensity")) {
            ret = TURN;
        } else if (name.equalsIgnoreCase("Buried Index")) {
            ret = BURIED;
        } else if (name.equalsIgnoreCase("Nucleotide")) {
            ret = NUCLEOTIDE;
        } else if (name.equalsIgnoreCase("User Defined")) {
            ret = USER_DEFINED;
        }

        return ret;
    }

    public static String getColourName(ColourSchemeI cs) {
        if (cs instanceof ConservationColourScheme) {
            cs = ((ConservationColourScheme) cs).cs;
        }

        int index = 11;

        if (cs instanceof ClustalxColourScheme) {
            index = CLUSTAL;
        } else if (cs instanceof Blosum62ColourScheme) {
            index = BLOSUM;
        } else if (cs instanceof PIDColourScheme) {
            index = PID;
        } else if (cs instanceof ZappoColourScheme) {
            index = ZAPPO;
        } else if (cs instanceof HydrophobicColourScheme) {
            index = HYDROPHOBIC;
        } else if (cs instanceof HelixColourScheme) {
            index = HELIX;
        } else if (cs instanceof StrandColourScheme) {
            index = STRAND;
        } else if (cs instanceof TurnColourScheme) {
            index = TURN;
        } else if (cs instanceof BuriedColourScheme) {
            index = BURIED;
        } else if (cs instanceof NucleotideColourScheme) {
            index = NUCLEOTIDE;
        } else if (cs instanceof UserColourScheme) {
            index = USER_DEFINED;
        }

        return getColourName(index);
    }

    public static String getColourName(int index) {
        String ret = null;

        switch (index) {
        case CLUSTAL:
            ret = "Clustal";

            break;

        case BLOSUM:
            ret = "Blosum62";

            break;

        case PID:
            ret = "% Identity";

            break;

        case ZAPPO:
            ret = "Zappo";

            break;

        case HYDROPHOBIC:
            ret = "Hydrophobic";

            break;

        case HELIX:
            ret = "Helix Propensity";

            break;

        case STRAND:
            ret = "Strand Propensity";

            break;

        case TURN:
            ret = "Turn Propensity";

            break;

        case BURIED:
            ret = "Buried Index";

            break;

        case NUCLEOTIDE:
            ret = "Nucleotide";

            break;

        case USER_DEFINED:
            ret = "User Defined";

            break;

        default:
            ret = "None";

            break;
        }

        return ret;
    }

    public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al,
        String name) {
        return getColour(al, getColourIndexFromName(name));
    }

    public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al,
        int index) {
        ColourSchemeI cs = null;

        switch (index) {
        case CLUSTAL:
            cs = new ClustalxColourScheme(al.getSequences(), al.getWidth());

            break;

        case BLOSUM:
            cs = new Blosum62ColourScheme();

            break;

        case PID:
            cs = new PIDColourScheme();

            break;

        case ZAPPO:
            cs = new ZappoColourScheme();

            break;

        case HYDROPHOBIC:
            cs = new HydrophobicColourScheme();

            break;

        case HELIX:
            cs = new HelixColourScheme();

            break;

        case STRAND:
            cs = new StrandColourScheme();

            break;

        case TURN:
            cs = new TurnColourScheme();

            break;

        case BURIED:
            cs = new BuriedColourScheme();

            break;

        case NUCLEOTIDE:
            cs = new NucleotideColourScheme();

            break;

        case USER_DEFINED:
            cs = new UserColourScheme(null);

            break;

        default:
            break;
        }

        return cs;
    }
}