/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see
* Kyte, J., and Doolittle, R.F., J. Mol. Biol. 1157, 105-132, 1982 **/ public class HydrophobicColourScheme extends ScoreColourScheme { private static final Color minScoreColour = new Color(0, 0, 255); private static final Color maxScoreColour = new Color(255, 0, 0); /** * Constructor */ public HydrophobicColourScheme() { super(JalviewColourScheme.Hydrophobic.toString(), ResidueProperties.aaIndex, ResidueProperties.hyd, minScoreColour, maxScoreColour); } @Override public boolean isPeptideSpecific() { return true; } /** * Returns a new instance of this colour scheme with which the given data may * be coloured */ @Override public ColourSchemeI getInstance(AlignViewportI view, AnnotatedCollectionI coll) { return new HydrophobicColourScheme(); } }