/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.schemes;
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
import java.util.Map;
/**
* DOCUMENT ME!
*
* @author $author$
* @version $Revision$
*/
public class NucleotideColourScheme extends ResidueColourScheme
{
/**
* Creates a new NucleotideColourScheme object.
*/
public NucleotideColourScheme()
{
super(ResidueProperties.nucleotideIndex, ResidueProperties.nucleotide);
}
@Override
public boolean isNucleotideSpecific()
{
return true;
}
@Override
public String getSchemeName()
{
return JalviewColourScheme.Nucleotide.toString();
}
/**
* Returns a new instance of this colour scheme with which the given data may
* be coloured
*/
@Override
public ColourSchemeI getInstance(AnnotatedCollectionI coll,
Map hrs)
{
return new NucleotideColourScheme();
}
}