/* * Jalview - A Sequence Alignment Editor and Viewer * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.schemes; import java.awt.*; import java.util.StringTokenizer; public class UserColourScheme extends ResidueColourScheme { protected String schemeName; public UserColourScheme() { } public UserColourScheme(Color[] newColors) { colors = newColors; } public UserColourScheme(String colour) { Color col = getColourFromString(colour); if(col==null) { System.out.println("Unknown colour!! "+colour); col = createColourFromName(colour); } colors = new Color[24]; for(int i=0; i<24; i++) colors[i] = col; } public Color[] getColours() { return colors; } public void setName(String name) { schemeName = name; } public String getName() { return schemeName; } public Color getColourFromString(String colour) { colour = colour.trim(); Color col = null; try { int value = Integer.parseInt(colour, 16); col = new Color(value); } catch (NumberFormatException ex) {} if (col == null) col = ColourSchemeProperty.getAWTColorFromName(colour); if (col == null) { try { java.util.StringTokenizer st = new java.util.StringTokenizer(colour, ","); int r = Integer.parseInt(st.nextToken()); int g = Integer.parseInt(st.nextToken()); int b = Integer.parseInt(st.nextToken()); col = new Color(r, g, b); } catch (Exception ex) {} } return col; } public Color createColourFromName(String name) { int r, g, b; int lsize = name.length(); int start = 0, end = lsize / 3; int rgbOffset = Math.abs(name.hashCode() % 10) * 15; r = Math.abs(name.substring(start, end).hashCode() + rgbOffset) % 210 + 20; start = end; end += lsize / 3; if (end > lsize) end = lsize; g = Math.abs(name.substring(start, end).hashCode() + rgbOffset) % 210 + 20; b = Math.abs(name.substring(end).hashCode() + rgbOffset) % 210 + 20; Color color = new Color(r, g, b); return color; } public void parseAppletParameter(String paramValue) { StringTokenizer st = new StringTokenizer(paramValue, ";"); StringTokenizer st2; String token=null, colour, residues; try{ while (st.hasMoreElements()) { token = st.nextToken().trim(); residues = token.substring(0, token.indexOf("=")); colour = token.substring(token.indexOf("=") + 1); st2 = new StringTokenizer(residues, " ,"); while (st2.hasMoreTokens()) { int colIndex = ( (Integer) ResidueProperties.aaHash. get(st2.nextToken())).intValue(); colors[colIndex] = getColourFromString(colour); } } } catch(Exception ex) { System.out.println("Error parsing userDefinedColours:\n" +token+"\n"+ex); } } }