package jalview.ws.dbsources;

import java.util.Hashtable;

import com.stevesoft.pat.Regex;

import jalview.datamodel.AlignmentI;
import jalview.datamodel.DBRefSource;
import jalview.ws.seqfetcher.DbSourceProxy;

public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
{

  public EmblCdsSouce() {
    super();
    addDbSourceProperty(DBRefSource.CODINGSEQDB); 
  }
  
  public String getAccessionSeparator()
  {
   return null;
  }

  public Regex getAccessionValidator()
  {
    // TODO Auto-generated method stub
    return null;
  }

  public String getDbSource()
  {
    return DBRefSource.EMBLCDS;
  }

  public String getDbVersion()
  {
    return "0"; // TODO : this is dynamically set for a returned record - not tied to proxy
  }

  public AlignmentI getSequenceRecords(String queries) throws Exception
  { 
    if (queries.indexOf(".")>-1)
    {
      queries = queries.substring(0, queries.indexOf("."));
    }
    return getEmblSequenceRecords(DBRefSource.EMBLCDS, queries);
  }

  public boolean isValidReference(String accession)
  {
    // TODO Auto-generated method stub
    return true;
  }
  /**
   * cDNA for LDHA_CHICK swissprot sequence
   */
  public String getTestQuery()
  {
    return "CAA37824";
  }

}