/**
 * 
 */
package jalview.ws.dbsources;

import java.util.Hashtable;

import com.stevesoft.pat.Regex;

import jalview.datamodel.AlignmentI;
import jalview.ws.DbSourceProxy;
import jalview.ws.DbSourceProxyImpl;
/**
 * TODO: later PFAM is a complex datasource - it currently returns a seed alignment, but could optionally return a full alignment.
 * TODO: later PFAM is a complex datasource - it could return a tree in addition to an alignment
 * TODO: HP: Incorporate jalview.gui.SequenceFetcher retrieval code here.
 * @author JimP
 *
 */
public class Pfam extends DbSourceProxyImpl implements DbSourceProxy
{

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getAccessionSeparator()
   */
  public String getAccessionSeparator()
  {
    // TODO Auto-generated method stub
    return null;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getAccessionValidator()
   */
  public Regex getAccessionValidator()
  {
    // TODO Auto-generated method stub
    return null;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getDbSource()
   */
  public String getDbSource()
  {
    // TODO Auto-generated method stub
    return null;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getDbSourceProperties()
   */
  public Hashtable getDbSourceProperties()
  {
    // TODO Auto-generated method stub
    return null;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getDbVersion()
   */
  public String getDbVersion()
  {
    // TODO Auto-generated method stub
    return null;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getRawRecords()
   */
  public StringBuffer getRawRecords()
  {
    // TODO Auto-generated method stub
    return null;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#getSequenceRecords(java.lang.String[])
   */
  public AlignmentI getSequenceRecords(String queries) throws Exception
  {
    throw new Exception("PFAM Retrieval not yet implemented - see jalview.gui.SequenceFetcher for current implementation");
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#isValidReference(java.lang.String)
   */
  public boolean isValidReference(String accession)
  {
    // TODO Auto-generated method stub
    return false;
  }

  /* (non-Javadoc)
   * @see jalview.ws.DbSourceProxy#queryInProgress()
   */
  public boolean queryInProgress()
  {
    // TODO Auto-generated method stub
    return false;
  }

  public String getTestQuery()
  {
    return "PF00535";
  }

}