/*
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ws.jws2;
import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.gui.AlignFrame;
import jalview.ws.jws2.dm.AAConSettings;
import jalview.ws.jws2.jabaws2.Jws2Instance;
import jalview.ws.params.WsParamSetI;
import java.util.List;
import compbio.metadata.Argument;
public abstract class JabawsAlignCalcWorker extends JabawsCalcWorker
{
public JabawsAlignCalcWorker(AlignViewportI alignViewport,
AlignmentViewPanel alignPanel)
{
super(alignViewport, alignPanel);
}
public JabawsAlignCalcWorker(Jws2Instance service, AlignFrame alignFrame,
WsParamSetI preset, List paramset)
{
super(service, alignFrame, preset, paramset);
}
/**
* Recover any existing parameters for this service
*/
protected void initViewportParams()
{
((jalview.gui.AlignViewport) alignViewport).setCalcIdSettingsFor(
getCalcId(),
new AAConSettings(true, service, this.preset,
(arguments != null) ? JabaParamStore
.getJwsArgsfromJaba(arguments) : null), true);
}
/**
*
* @return
*/
public abstract String getCalcId();
@Override
public void updateParameters(WsParamSetI newpreset, java.util.List newarguments)
{
super.updateParameters(newpreset, newarguments);
initViewportParams();
}
}