"
+ JvSwingUtils.wrapTooltip(""
+ (preset.isModifiable() ? "User Preset"
: "Service Preset") + "
"
+ preset.getDescription() + "
" + JvSwingUtils.wrapTooltip(aaui.getAAconToggleTooltip() + "
") + ""); aaConEnabled.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent arg0) { List" + JvSwingUtils.wrapTooltip(aaui.getAAeditSettingsTooltip() + "
") + ""); modifyParams.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent arg0) { showAAConAnnotationSettingsFor(aaui, alignFrame); } }); wsmenu.add(modifyParams); } return true; } private static void showAAConAnnotationSettingsFor(final AlignAnalysisUIText aaui, AlignFrame alignFrame) { /* * preferred settings Whether AACon is automatically recalculated Which * AACon server to use What parameters to use */ // could actually do a class search for this too AAConSettings fave = (AAConSettings) alignFrame.getViewport() .getCalcIdSettingsFor(aaui.getCalcId()); if (fave == null) { fave = createDefaultAAConSettings(aaui); } new SequenceAnnotationWSClient(fave, alignFrame, true); } private static void buildCurrentAAConWorkerFor(final AlignAnalysisUIText aaui, AlignFrame alignFrame) { buildCurrentAAConWorkerFor(aaui, alignFrame, null); } private static void buildCurrentAAConWorkerFor(final AlignAnalysisUIText aaui, AlignFrame alignFrame, Jws2Instance service) { /* * preferred settings Whether AACon is automatically recalculated Which * AACon server to use What parameters to use */ AAConSettings fave = (AAConSettings) alignFrame.getViewport() .getCalcIdSettingsFor(aaui.getCalcId()); if (fave == null) { fave = createDefaultAAConSettings(aaui, service); } else { if (service != null && !fave.getService().hosturl.equals(service.hosturl)) { Cache.log.debug("Changing AACon service to " + service.hosturl + " from " + fave.getService().hosturl); fave.setService(service); } } new SequenceAnnotationWSClient(fave, alignFrame, false); } private static AAConSettings createDefaultAAConSettings(AlignAnalysisUIText aaui) { return createDefaultAAConSettings(aaui, null); } private static AAConSettings createDefaultAAConSettings(AlignAnalysisUIText aaui, Jws2Instance service) { if (service != null) { if (!service.serviceType.toString().equals( compbio.ws.client.Services.AAConWS.toString())) { Cache.log .warn("Ignoring invalid preferred service for AACon calculations (service type was " + service.serviceType + ")"); service = null; } else { // check service is actually in the list of currently avaialable // services if (!Jws2Discoverer.getDiscoverer().getServices().contains(service)) { // it isn't .. service = null; } } } if (service == null) { // get the default service for AACon service = Jws2Discoverer.getDiscoverer().getPreferredServiceFor(null, aaui.getServiceType()); } if (service == null) { // TODO raise dialog box explaining error, and/or open the JABA // preferences menu. throw new Error("No AACon service found."); } return new AAConSettings(true, service, null, null); } private static void removeCurrentAAConWorkerFor(AlignAnalysisUIText aaui, AlignFrame alignFrame) { alignFrame.getViewport().getCalcManager() .removeRegisteredWorkersOfClass(aaui.getClient()); } }