package jalview.ws.jws2.dm; import java.util.ArrayList; import java.util.List; import compbio.metadata.Argument; import compbio.metadata.Preset; import jalview.ws.jws2.JabaPreset; import jalview.ws.jws2.jabaws2.Jws2Instance; import jalview.ws.params.ArgumentI; import jalview.ws.params.WsParamSetI; /** * preferences for running AACons service * * @author jprocter TODO: refactor to a generic 'last job and service run' * container ? */ public class AAConsSettings { boolean autoUpdate; Jws2Instance service; WsParamSetI preset; List jobArgset; public AAConsSettings(boolean autoUpdate, Jws2Instance service, WsParamSetI preset, List jobArgset) { super(); this.autoUpdate = autoUpdate; this.service = service; this.preset = preset; this.jobArgset = jobArgset; } public boolean isAutoUpdate() { return autoUpdate; } public void setAutoUpdate(boolean autoUpdate) { this.autoUpdate = autoUpdate; } public Jws2Instance getService() { return service; } public void setService(Jws2Instance service) { this.service = service; if (preset != null) { // migrate preset to new service for (String url : preset.getApplicableUrls()) { if (url.equals(service.getUri())) { return; } } WsParamSetI pr = service.getParamStore().getPreset(preset.getName()); if (pr instanceof JabaPreset && preset instanceof JabaPreset) { // easy - Presets are identical (we assume) preset = pr; return; } List oldargs = new ArrayList(), newargs = new ArrayList(); oldargs.addAll(preset.getArguments()); // need to compare parameters for (ArgumentI newparg : pr.getArguments()) { if (!oldargs.remove(newparg)) { newargs.add(newparg); } } if (oldargs.size() == 0 && newargs.size() == 0) { // exact match. preset = pr; return; } // Try even harder to migrate arguments. throw new Error("Parameter migration not implemented yet"); } } public WsParamSetI getPreset() { return preset; } public void setPreset(WsParamSetI preset) { // TODO: test if service URL is in presets this.preset = preset; } public List getJobArgset() { return jobArgset; } public void setJobArgset(List jobArgset) { // TODO: test if parameters valid for service this.jobArgset = jobArgset; } }