/*
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*/
package jalview.ws.jws2.dm;
import java.io.BufferedReader;
import java.io.IOException;
import java.io.Reader;
import java.io.Writer;
import java.util.ArrayList;
import java.util.List;
import compbio.metadata.Argument;
import compbio.metadata.Option;
import jalview.ws.jws2.JabaParamStore;
import jalview.ws.jws2.ParameterUtils;
import jalview.ws.params.ArgumentI;
import jalview.ws.params.ParamDatastoreI;
import jalview.ws.params.WsParamSetI;
public class JabaWsParamSet implements WsParamSetI
{
/**
* raw jaba arguments.
*/
List