/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ws.jws2.jabaws2;
import jalview.ws.jws2.AAConClient;
import jalview.ws.jws2.JPred301Client;
import jalview.ws.jws2.RNAalifoldClient;
import jalview.ws.uimodel.AlignAnalysisUIText;
import java.util.HashMap;
import java.util.HashSet;
import compbio.data.msa.JABAService;
public class Jws2InstanceFactory
{
private static HashMap aaConGUI;
private static HashSet ignoreGUI;
private static String category_rewrite(String cat_name)
{
return (cat_name != null && cat_name.equals("Prediction")) ? "Secondary Structure Prediction"
: cat_name;
}
private static void init()
{
if (aaConGUI == null)
{
aaConGUI = new HashMap();
aaConGUI.put(compbio.ws.client.Services.AAConWS.toString(),
AAConClient.getAlignAnalysisUITest());
aaConGUI.put(compbio.ws.client.Services.RNAalifoldWS.toString(),
RNAalifoldClient.getAlignAnalysisUITest());
// disable the JPred301 client in jalview ...
ignoreGUI = new HashSet();
ignoreGUI.add(compbio.ws.client.Services.JpredWS.toString());
aaConGUI.put(compbio.ws.client.Services.JpredWS.toString(),
JPred301Client.getAlignAnalysisUITest());
}
}
/**
* exclusion list to avoid creating GUI elements for services we don't fully
* support
*
* @param serviceType
* @return
*/
public static boolean ignoreService(String serviceType)
{
init();
return (ignoreGUI.contains(serviceType.toString()));
}
/**
* construct a service instance and configure it with any additional
* properties needed so Jalview can access it correctly
*
* @param jwsservers
* @param serviceType
* @param name
* @param description
* @param service
* @return
*/
public static Jws2Instance newJws2Instance(String jwsservers,
String serviceType, String name, String description,
JABAService service)
{
init();
Jws2Instance svc = new Jws2Instance(jwsservers, serviceType,
category_rewrite(name), description, service);
svc.aaui = aaConGUI.get(serviceType.toString());
return svc;
}
}