// // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 // See http://java.sun.com/xml/jaxb // Any modifications to this file will be lost upon recompilation of the source schema. // Generated on: 2023.05.13 at 06:58:41 PM BST // package jalview.xml.binding.jalview; import java.math.BigInteger; import java.util.ArrayList; import java.util.List; import javax.xml.bind.annotation.XmlAccessType; import javax.xml.bind.annotation.XmlAccessorType; import javax.xml.bind.annotation.XmlAttribute; import javax.xml.bind.annotation.XmlElement; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlType; /** *
* Java class for anonymous complex type. * *
* The following schema fragment specifies the expected content contained within * this class. * *
* <complexType> * <complexContent> * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> * <sequence> * <element name="alcodon" maxOccurs="unbounded" minOccurs="0"> * <complexType> * <complexContent> * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> * <attribute name="pos1" type="{http://www.w3.org/2001/XMLSchema}integer" /> * <attribute name="pos2" type="{http://www.w3.org/2001/XMLSchema}integer" /> * <attribute name="pos3" type="{http://www.w3.org/2001/XMLSchema}integer" /> * </restriction> * </complexContent> * </complexType> * </element> * <element name="alcodMap" maxOccurs="unbounded" minOccurs="0"> * <complexType> * <complexContent> * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> * <sequence> * <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping"/> * </sequence> * <attribute name="dnasq" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /> * </restriction> * </complexContent> * </complexType> * </element> * </sequence> * </restriction> * </complexContent> * </complexType> ** * */ @XmlAccessorType(XmlAccessType.FIELD) @XmlType(name = "", propOrder = { "alcodon", "alcodMap" }) @XmlRootElement(name = "AlcodonFrame") public class AlcodonFrame { protected List
* This accessor method returns a reference to the live list, not a snapshot.
* Therefore any modification you make to the returned list will be present
* inside the JAXB object. This is why there is not a set
method
* for the alcodon property.
*
*
* For example, to add a new item, do as follows: * *
* getAlcodon().add(newItem); ** * *
* Objects of the following type(s) are allowed in the list
* {@link AlcodonFrame.Alcodon }
*
*
*/
public List
* This accessor method returns a reference to the live list, not a snapshot.
* Therefore any modification you make to the returned list will be present
* inside the JAXB object. This is why there is not a
* For example, to add a new item, do as follows:
*
*
* Objects of the following type(s) are allowed in the list
* {@link AlcodonFrame.AlcodMap }
*
*
*/
public List
* Java class for anonymous complex type.
*
*
* The following schema fragment specifies the expected content contained
* within this class.
*
*
* Java class for anonymous complex type.
*
*
* The following schema fragment specifies the expected content contained
* within this class.
*
* set
method
* for the alcodMap property.
*
*
* getAlcodMap().add(newItem);
*
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
* <element ref="{www.vamsas.ac.uk/jalview/version2}Mapping"/>
* </sequence>
* <attribute name="dnasq" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = { "mapping" })
public static class AlcodMap
{
@XmlElement(name = "Mapping", required = true)
protected Mapping mapping;
@XmlAttribute(name = "dnasq", required = true)
protected String dnasq;
/**
*
* a Mapping entry and an associated protein sequence
*
*
* @return possible object is {@link Mapping }
*
*/
public Mapping getMapping()
{
return mapping;
}
/**
* Sets the value of the mapping property.
*
* @param value
* allowed object is {@link Mapping }
*
*/
public void setMapping(Mapping value)
{
this.mapping = value;
}
/**
* Gets the value of the dnasq property.
*
* @return possible object is {@link String }
*
*/
public String getDnasq()
{
return dnasq;
}
/**
* Sets the value of the dnasq property.
*
* @param value
* allowed object is {@link String }
*
*/
public void setDnasq(String value)
{
this.dnasq = value;
}
}
/**
*
* specifies a series of aligned codons from an associated DNA sequence
* alignment that when translated correspond to columns of a peptide
* alignment. Element may have either all pos1,2,3 attributes specified, or
* none at all (indicating a gapped column with no translated peptide).
*
*
*
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <attribute name="pos1" type="{http://www.w3.org/2001/XMLSchema}integer" />
* <attribute name="pos2" type="{http://www.w3.org/2001/XMLSchema}integer" />
* <attribute name="pos3" type="{http://www.w3.org/2001/XMLSchema}integer" />
* </restriction>
* </complexContent>
* </complexType>
*
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "")
public static class Alcodon
{
@XmlAttribute(name = "pos1")
protected BigInteger pos1;
@XmlAttribute(name = "pos2")
protected BigInteger pos2;
@XmlAttribute(name = "pos3")
protected BigInteger pos3;
/**
* Gets the value of the pos1 property.
*
* @return possible object is {@link BigInteger }
*
*/
public BigInteger getPos1()
{
return pos1;
}
/**
* Sets the value of the pos1 property.
*
* @param value
* allowed object is {@link BigInteger }
*
*/
public void setPos1(BigInteger value)
{
this.pos1 = value;
}
/**
* Gets the value of the pos2 property.
*
* @return possible object is {@link BigInteger }
*
*/
public BigInteger getPos2()
{
return pos2;
}
/**
* Sets the value of the pos2 property.
*
* @param value
* allowed object is {@link BigInteger }
*
*/
public void setPos2(BigInteger value)
{
this.pos2 = value;
}
/**
* Gets the value of the pos3 property.
*
* @return possible object is {@link BigInteger }
*
*/
public BigInteger getPos3()
{
return pos3;
}
/**
* Sets the value of the pos3 property.
*
* @param value
* allowed object is {@link BigInteger }
*
*/
public void setPos3(BigInteger value)
{
this.pos3 = value;
}
}
}