//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
// Any modifications to this file will be lost upon recompilation of the source schema. 
// Generated on: 2018.12.20 at 11:47:26 AM GMT 
//


package jalview.xml.binding.jalview;

import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlType;


/**
 * <p>Java class for anonymous complex type.
 * 
 * <p>The following schema fragment specifies the expected content contained within this class.
 * 
 * <pre>
 * &lt;complexType>
 *   &lt;complexContent>
 *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       &lt;sequence>
 *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Sequence" maxOccurs="unbounded" minOccurs="0"/>
 *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Annotation" maxOccurs="unbounded" minOccurs="0"/>
 *         &lt;element name="sequenceSetProperties" maxOccurs="unbounded" minOccurs="0">
 *           &lt;complexType>
 *             &lt;complexContent>
 *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 &lt;attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
 *                 &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
 *               &lt;/restriction>
 *             &lt;/complexContent>
 *           &lt;/complexType>
 *         &lt;/element>
 *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}AlcodonFrame" maxOccurs="unbounded" minOccurs="0"/>
 *       &lt;/sequence>
 *       &lt;attribute name="gapChar" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
 *       &lt;attribute name="datasetId" type="{http://www.w3.org/2001/XMLSchema}string" />
 *     &lt;/restriction>
 *   &lt;/complexContent>
 * &lt;/complexType>
 * </pre>
 * 
 * 
 */
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(name = "", propOrder = {
    "sequence",
    "annotation",
    "sequenceSetProperties",
    "alcodonFrame"
})
@XmlRootElement(name = "SequenceSet")
public class SequenceSet {

    @XmlElement(name = "Sequence")
    protected List<Sequence> sequence;
    @XmlElement(name = "Annotation")
    protected List<Annotation> annotation;
    protected List<SequenceSet.SequenceSetProperties> sequenceSetProperties;
    @XmlElement(name = "AlcodonFrame")
    protected List<AlcodonFrame> alcodonFrame;
    @XmlAttribute(name = "gapChar", required = true)
    protected String gapChar;
    @XmlAttribute(name = "datasetId")
    protected String datasetId;

    /**
     * Gets the value of the sequence property.
     * 
     * <p>
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a <CODE>set</CODE> method for the sequence property.
     * 
     * <p>
     * For example, to add a new item, do as follows:
     * <pre>
     *    getSequence().add(newItem);
     * </pre>
     * 
     * 
     * <p>
     * Objects of the following type(s) are allowed in the list
     * {@link Sequence }
     * 
     * 
     */
    public List<Sequence> getSequence() {
        if (sequence == null) {
            sequence = new ArrayList<Sequence>();
        }
        return this.sequence;
    }

    /**
     * Gets the value of the annotation property.
     * 
     * <p>
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a <CODE>set</CODE> method for the annotation property.
     * 
     * <p>
     * For example, to add a new item, do as follows:
     * <pre>
     *    getAnnotation().add(newItem);
     * </pre>
     * 
     * 
     * <p>
     * Objects of the following type(s) are allowed in the list
     * {@link Annotation }
     * 
     * 
     */
    public List<Annotation> getAnnotation() {
        if (annotation == null) {
            annotation = new ArrayList<Annotation>();
        }
        return this.annotation;
    }

    /**
     * Gets the value of the sequenceSetProperties property.
     * 
     * <p>
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a <CODE>set</CODE> method for the sequenceSetProperties property.
     * 
     * <p>
     * For example, to add a new item, do as follows:
     * <pre>
     *    getSequenceSetProperties().add(newItem);
     * </pre>
     * 
     * 
     * <p>
     * Objects of the following type(s) are allowed in the list
     * {@link SequenceSet.SequenceSetProperties }
     * 
     * 
     */
    public List<SequenceSet.SequenceSetProperties> getSequenceSetProperties() {
        if (sequenceSetProperties == null) {
            sequenceSetProperties = new ArrayList<SequenceSet.SequenceSetProperties>();
        }
        return this.sequenceSetProperties;
    }

    /**
     * Gets the value of the alcodonFrame property.
     * 
     * <p>
     * This accessor method returns a reference to the live list,
     * not a snapshot. Therefore any modification you make to the
     * returned list will be present inside the JAXB object.
     * This is why there is not a <CODE>set</CODE> method for the alcodonFrame property.
     * 
     * <p>
     * For example, to add a new item, do as follows:
     * <pre>
     *    getAlcodonFrame().add(newItem);
     * </pre>
     * 
     * 
     * <p>
     * Objects of the following type(s) are allowed in the list
     * {@link AlcodonFrame }
     * 
     * 
     */
    public List<AlcodonFrame> getAlcodonFrame() {
        if (alcodonFrame == null) {
            alcodonFrame = new ArrayList<AlcodonFrame>();
        }
        return this.alcodonFrame;
    }

    /**
     * Gets the value of the gapChar property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getGapChar() {
        return gapChar;
    }

    /**
     * Sets the value of the gapChar property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setGapChar(String value) {
        this.gapChar = value;
    }

    /**
     * Gets the value of the datasetId property.
     * 
     * @return
     *     possible object is
     *     {@link String }
     *     
     */
    public String getDatasetId() {
        return datasetId;
    }

    /**
     * Sets the value of the datasetId property.
     * 
     * @param value
     *     allowed object is
     *     {@link String }
     *     
     */
    public void setDatasetId(String value) {
        this.datasetId = value;
    }


    /**
     * <p>Java class for anonymous complex type.
     * 
     * <p>The following schema fragment specifies the expected content contained within this class.
     * 
     * <pre>
     * &lt;complexType>
     *   &lt;complexContent>
     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
     *       &lt;attribute name="key" type="{http://www.w3.org/2001/XMLSchema}string" />
     *       &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
     *     &lt;/restriction>
     *   &lt;/complexContent>
     * &lt;/complexType>
     * </pre>
     * 
     * 
     */
    @XmlAccessorType(XmlAccessType.FIELD)
    @XmlType(name = "")
    public static class SequenceSetProperties {

        @XmlAttribute(name = "key")
        protected String key;
        @XmlAttribute(name = "value")
        protected String value;

        /**
         * Gets the value of the key property.
         * 
         * @return
         *     possible object is
         *     {@link String }
         *     
         */
        public String getKey() {
            return key;
        }

        /**
         * Sets the value of the key property.
         * 
         * @param value
         *     allowed object is
         *     {@link String }
         *     
         */
        public void setKey(String value) {
            this.key = value;
        }

        /**
         * Gets the value of the value property.
         * 
         * @return
         *     possible object is
         *     {@link String }
         *     
         */
        public String getValue() {
            return value;
        }

        /**
         * Sets the value of the value property.
         * 
         * @param value
         *     allowed object is
         *     {@link String }
         *     
         */
        public void setValue(String value) {
            this.value = value;
        }

    }

}