/*
 * This class was automatically generated with 
 * <a href="http://www.castor.org">Castor 0.9.9M1</a>, using an XML
 * Schema.
 * $Id$
 */

package org.vamsas.client.objects;

  //---------------------------------/
 //- Imported classes and packages -/
//---------------------------------/

import java.io.IOException;
import java.io.Reader;
import java.io.Serializable;
import java.io.Writer;
import java.util.Enumeration;
import java.util.Vector;
import org.exolab.castor.xml.MarshalException;
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
import org.exolab.castor.xml.ValidationException;
import org.xml.sax.ContentHandler;

/**
 * Class SequenceType.
 * 
 * @version $Revision$ $Date$
 */
public class SequenceType extends org.vamsas.client.object 
implements java.io.Serializable
{


      //--------------------------/
     //- Class/Member Variables -/
    //--------------------------/

    /**
     * Field _start
     */
    private int _start;

    /**
     * keeps track of state for field: _start
     */
    private boolean _has_start;

    /**
     * Field _end
     */
    private int _end;

    /**
     * keeps track of state for field: _end
     */
    private boolean _has_end;

    /**
     * Field _sequence
     */
    private java.lang.String _sequence;

    /**
     * Field _name
     */
    private java.lang.String _name;

    /**
     * Field _dbRefList
     */
    private java.util.Vector _dbRefList;


      //----------------/
     //- Constructors -/
    //----------------/

    public SequenceType() 
     {
        super();
        _dbRefList = new Vector();
    } //-- org.vamsas.client.objects.SequenceType()


      //-----------/
     //- Methods -/
    //-----------/

    /**
     * Method addDbRef
     * 
     * 
     * 
     * @param vDbRef
     */
    public void addDbRef(org.vamsas.client.objects.DbRef vDbRef)
        throws java.lang.IndexOutOfBoundsException
    {
        _dbRefList.addElement(vDbRef);
    } //-- void addDbRef(org.vamsas.client.objects.DbRef) 

    /**
     * Method addDbRef
     * 
     * 
     * 
     * @param index
     * @param vDbRef
     */
    public void addDbRef(int index, org.vamsas.client.objects.DbRef vDbRef)
        throws java.lang.IndexOutOfBoundsException
    {
        _dbRefList.insertElementAt(vDbRef, index);
    } //-- void addDbRef(int, org.vamsas.client.objects.DbRef) 

    /**
     * Method deleteEnd
     * 
     */
    public void deleteEnd()
    {
        this._has_end= false;
    } //-- void deleteEnd() 

    /**
     * Method deleteStart
     * 
     */
    public void deleteStart()
    {
        this._has_start= false;
    } //-- void deleteStart() 

    /**
     * Method enumerateDbRef
     * 
     * 
     * 
     * @return Enumeration
     */
    public java.util.Enumeration enumerateDbRef()
    {
        return _dbRefList.elements();
    } //-- java.util.Enumeration enumerateDbRef() 

    /**
     * Note: hashCode() has not been overriden
     * 
     * @param obj
     * @return boolean
     */
    public boolean equals(java.lang.Object obj)
    {
        if ( this == obj )
            return true;
        
        if (super.equals(obj)==false)
            return false;
        
        if (obj instanceof SequenceType) {
        
            SequenceType temp = (SequenceType)obj;
            if (this._start != temp._start)
                return false;
            if (this._has_start != temp._has_start)
                return false;
            if (this._end != temp._end)
                return false;
            if (this._has_end != temp._has_end)
                return false;
            if (this._sequence != null) {
                if (temp._sequence == null) return false;
                else if (!(this._sequence.equals(temp._sequence))) 
                    return false;
            }
            else if (temp._sequence != null)
                return false;
            if (this._name != null) {
                if (temp._name == null) return false;
                else if (!(this._name.equals(temp._name))) 
                    return false;
            }
            else if (temp._name != null)
                return false;
            if (this._dbRefList != null) {
                if (temp._dbRefList == null) return false;
                else if (!(this._dbRefList.equals(temp._dbRefList))) 
                    return false;
            }
            else if (temp._dbRefList != null)
                return false;
            return true;
        }
        return false;
    } //-- boolean equals(java.lang.Object) 

    /**
     * Method getDbRef
     * 
     * 
     * 
     * @param index
     * @return DbRef
     */
    public org.vamsas.client.objects.DbRef getDbRef(int index)
        throws java.lang.IndexOutOfBoundsException
    {
        //-- check bounds for index
        if ((index < 0) || (index > _dbRefList.size())) {
            throw new IndexOutOfBoundsException("getDbRef: Index value '"+index+"' not in range [0.."+_dbRefList.size()+ "]");
        }
        
        return (org.vamsas.client.objects.DbRef) _dbRefList.elementAt(index);
    } //-- org.vamsas.client.objects.DbRef getDbRef(int) 

    /**
     * Method getDbRef
     * 
     * 
     * 
     * @return DbRef
     */
    public org.vamsas.client.objects.DbRef[] getDbRef()
    {
        int size = _dbRefList.size();
        org.vamsas.client.objects.DbRef[] mArray = new org.vamsas.client.objects.DbRef[size];
        for (int index = 0; index < size; index++) {
            mArray[index] = (org.vamsas.client.objects.DbRef) _dbRefList.elementAt(index);
        }
        return mArray;
    } //-- org.vamsas.client.objects.DbRef[] getDbRef() 

    /**
     * Method getDbRefAsReference
     * 
     * Returns a reference to 'dbRef'. No type checking is
     * performed on any modications to the Vector.
     * 
     * @return Vector
     * @return returns a reference to the Vector.
     */
    public java.util.Vector getDbRefAsReference()
    {
        return _dbRefList;
    } //-- java.util.Vector getDbRefAsReference() 

    /**
     * Method getDbRefCount
     * 
     * 
     * 
     * @return int
     */
    public int getDbRefCount()
    {
        return _dbRefList.size();
    } //-- int getDbRefCount() 

    /**
     * Returns the value of field 'end'.
     * 
     * @return int
     * @return the value of field 'end'.
     */
    public int getEnd()
    {
        return this._end;
    } //-- int getEnd() 

    /**
     * Returns the value of field 'name'.
     * 
     * @return String
     * @return the value of field 'name'.
     */
    public java.lang.String getName()
    {
        return this._name;
    } //-- java.lang.String getName() 

    /**
     * Returns the value of field 'sequence'.
     * 
     * @return String
     * @return the value of field 'sequence'.
     */
    public java.lang.String getSequence()
    {
        return this._sequence;
    } //-- java.lang.String getSequence() 

    /**
     * Returns the value of field 'start'.
     * 
     * @return int
     * @return the value of field 'start'.
     */
    public int getStart()
    {
        return this._start;
    } //-- int getStart() 

    /**
     * Method hasEnd
     * 
     * 
     * 
     * @return boolean
     */
    public boolean hasEnd()
    {
        return this._has_end;
    } //-- boolean hasEnd() 

    /**
     * Method hasStart
     * 
     * 
     * 
     * @return boolean
     */
    public boolean hasStart()
    {
        return this._has_start;
    } //-- boolean hasStart() 

    /**
     * Method isValid
     * 
     * 
     * 
     * @return boolean
     */
    public boolean isValid()
    {
        try {
            validate();
        }
        catch (org.exolab.castor.xml.ValidationException vex) {
            return false;
        }
        return true;
    } //-- boolean isValid() 

    /**
     * Method marshal
     * 
     * 
     * 
     * @param out
     */
    public void marshal(java.io.Writer out)
        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
    {
        
        Marshaller.marshal(this, out);
    } //-- void marshal(java.io.Writer) 

    /**
     * Method marshal
     * 
     * 
     * 
     * @param handler
     */
    public void marshal(org.xml.sax.ContentHandler handler)
        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
    {
        
        Marshaller.marshal(this, handler);
    } //-- void marshal(org.xml.sax.ContentHandler) 

    /**
     * Method removeAllDbRef
     * 
     */
    public void removeAllDbRef()
    {
        _dbRefList.removeAllElements();
    } //-- void removeAllDbRef() 

    /**
     * Method removeDbRef
     * 
     * 
     * 
     * @param index
     * @return DbRef
     */
    public org.vamsas.client.objects.DbRef removeDbRef(int index)
    {
        java.lang.Object obj = _dbRefList.elementAt(index);
        _dbRefList.removeElementAt(index);
        return (org.vamsas.client.objects.DbRef) obj;
    } //-- org.vamsas.client.objects.DbRef removeDbRef(int) 

    /**
     * Method setDbRef
     * 
     * 
     * 
     * @param index
     * @param vDbRef
     */
    public void setDbRef(int index, org.vamsas.client.objects.DbRef vDbRef)
        throws java.lang.IndexOutOfBoundsException
    {
        //-- check bounds for index
        if ((index < 0) || (index > _dbRefList.size())) {
            throw new IndexOutOfBoundsException("setDbRef: Index value '"+index+"' not in range [0.."+_dbRefList.size()+ "]");
        }
        _dbRefList.setElementAt(vDbRef, index);
    } //-- void setDbRef(int, org.vamsas.client.objects.DbRef) 

    /**
     * Method setDbRef
     * 
     * 
     * 
     * @param dbRefArray
     */
    public void setDbRef(org.vamsas.client.objects.DbRef[] dbRefArray)
    {
        //-- copy array
        _dbRefList.removeAllElements();
        for (int i = 0; i < dbRefArray.length; i++) {
            _dbRefList.addElement(dbRefArray[i]);
        }
    } //-- void setDbRef(org.vamsas.client.objects.DbRef) 

    /**
     * Method setDbRef
     * 
     * Sets the value of 'dbRef' by copying the given Vector.
     * 
     * @param dbRefVector the Vector to copy.
     */
    public void setDbRef(java.util.Vector dbRefVector)
    {
        //-- copy vector
        _dbRefList.removeAllElements();
        for (int i = 0; i < dbRefVector.size(); i++) {
            _dbRefList.addElement((org.vamsas.client.objects.DbRef)dbRefVector.elementAt(i));
        }
    } //-- void setDbRef(java.util.Vector) 

    /**
     * Method setDbRefAsReference
     * 
     * Sets the value of 'dbRef' by setting it to the given Vector.
     * No type checking is performed.
     * 
     * @param dbRefVector the Vector to copy.
     */
    public void setDbRefAsReference(java.util.Vector dbRefVector)
    {
        _dbRefList = dbRefVector;
    } //-- void setDbRefAsReference(java.util.Vector) 

    /**
     * Sets the value of field 'end'.
     * 
     * @param end the value of field 'end'.
     */
    public void setEnd(int end)
    {
        this._end = end;
        this._has_end = true;
    } //-- void setEnd(int) 

    /**
     * Sets the value of field 'name'.
     * 
     * @param name the value of field 'name'.
     */
    public void setName(java.lang.String name)
    {
        this._name = name;
    } //-- void setName(java.lang.String) 

    /**
     * Sets the value of field 'sequence'.
     * 
     * @param sequence the value of field 'sequence'.
     */
    public void setSequence(java.lang.String sequence)
    {
        this._sequence = sequence;
    } //-- void setSequence(java.lang.String) 

    /**
     * Sets the value of field 'start'.
     * 
     * @param start the value of field 'start'.
     */
    public void setStart(int start)
    {
        this._start = start;
        this._has_start = true;
    } //-- void setStart(int) 

    /**
     * Method unmarshal
     * 
     * 
     * 
     * @param reader
     * @return SequenceType
     */
    public static org.vamsas.client.objects.SequenceType unmarshal(java.io.Reader reader)
        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
    {
        return (org.vamsas.client.objects.SequenceType) Unmarshaller.unmarshal(org.vamsas.client.objects.SequenceType.class, reader);
    } //-- org.vamsas.client.objects.SequenceType unmarshal(java.io.Reader) 

    /**
     * Method validate
     * 
     */
    public void validate()
        throws org.exolab.castor.xml.ValidationException
    {
        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
        validator.validate(this);
    } //-- void validate() 

}