/*
* This file is part of the Vamsas Client version 0.1.
* Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite,
* Andrew Waterhouse and Dominik Lindner.
*
* Earlier versions have also been incorporated into Jalview version 2.4
* since 2008, and TOPALi version 2 since 2007.
*
* The Vamsas Client is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The Vamsas Client is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the Vamsas Client. If not, see
* The following steps came from Effective Java Programming Language * Guide by Joshua Bloch, Chapter 3 * * @return a hash code value for the object. */ public int hashCode() { int result = super.hashCode(); long tmp; result = 37 * result + (_graph ? 0 : 1); if (_provenance != null && !org.castor.util.CycleBreaker.startingToCycle(_provenance)) { result = 37 * result + _provenance.hashCode(); org.castor.util.CycleBreaker.releaseCycleHandle(_provenance); } return result; } /** * Returns the value of field 'graph'. The field 'graph' has the following * description: TODO: decide if this flag is redundant - when true it would * suggest that the annotationElement values together form a graph * * * @return the value of field 'Graph'. */ public boolean isGraph() { return this._graph; } /** * Method isValid. * * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; } /** * * * @param out * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); } /** * * * @param handler * @throws java.io.IOException * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); } /** * Sets the value of field 'graph'. The field 'graph' has the following * description: TODO: decide if this flag is redundant - when true it would * suggest that the annotationElement values together form a graph * * * @param graph * the value of field 'graph'. */ public void setGraph(final boolean graph) { this._graph = graph; this._has_graph = true; } /** * Sets the value of field 'provenance'. * * @param provenance * the value of field 'provenance'. */ public void setProvenance( final uk.ac.vamsas.objects.core.Provenance provenance) { this._provenance = provenance; } /** * Method unmarshal. * * @param reader * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @return the unmarshaled uk.ac.vamsas.objects.core.RangeType */ public static uk.ac.vamsas.objects.core.RangeType unmarshal( final java.io.Reader reader) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (uk.ac.vamsas.objects.core.RangeType) Unmarshaller.unmarshal( uk.ac.vamsas.objects.core.AlignmentSequenceAnnotation.class, reader); } /** * * * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); } }