package uk.ac.vamsas.objects.utils; import java.io.IOException; import uk.ac.vamsas.objects.core.Tree; import uk.ac.vamsas.objects.utils.trees.NewickFile; public class Trees { /** * TODO: implement * helper functions based on NewickFile tree parser * * 1. create a newickfile object from a newick string. * 2. let user map a vamsas object to each node by setting that node's ((SequenceNode)node).setElement(VorbaId) * 3. generate Tree object with newickString as a newick string, and added treenodes to record mapping to vorba ids */ }