#---JalviewX Properties File---
#Tue May 28 14:24:20 BST 2024
SHOW_CONSERVATION=true
USE_PROXY=false
SHOW_OCCUPANCY=false
SHOW_UNCONSERVED=false
MEMORY_CUSTOMISED_SETTINGS=false
EPS_RENDERING=Prompt each time
MAP_WITH_SIFTS=false
SHOW_ENFIN_SERVICES=true
JAVA_CONSOLE_SCREEN_WIDTH=900
HIDDEN_COLOUR=2c2c2c
YEAR=2018
SORT_ANNOTATIONS=NONE
SCREEN_HEIGHT=1930
SHOW_STARTUP_FILE=true
SCREENGEOMETRY_HEIGHT=2160
JALVIEW_NEWS_RSS_LASTMODIFIED=22 May 2024, 16\:43\:10
STRUCT_FROM_PDB=true
RIGHT_ALIGN_IDS=false
SHOW_ANNOTATIONS=true
PIR_JVSUFFIX=true
ADD_TEMPFACT_ANN=true
GAP_COLOUR=c0c0c0
SHOW_IDENTITY=true
PIR_MODELLER=false
RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='Fasta',writeasfile$
FASTA_JVSUFFIX=true
PROXY_AUTH=false
FIGURE_FIXEDIDWIDTH=
SHOW_JAVA_CONSOLE=false
SCALE_PROTEIN_TO_CDNA=false
BACKUPFILES_SAVED=.bak%n\t3\tfalse\tfalse\t3\tfalse
AUTO_CALC_CONSENSUS=true
SCREEN_WIDTH=1900
SCREEN_X=22
SHOW_GROUP_CONSENSUS=false
SCREEN_Y=0
LAST_DIRECTORY=/home/bsoares/Work/git/develop/jalview/examples
JAVA_CONSOLE_SCREEN_Y=368
JAVA_CONSOLE_SCREEN_X=1010
DEFAULT_COLOUR_PROT=None
SORT_ALIGNMENT=No sort
MEMORY_JVMMEMPC=90
SHOW_AUTOCALC_ABOVE=true
PFAM_JVSUFFIX=true
WSMENU_BYHOST=false
DEFAULT_URL=EMBL-EBI Search
HTML_RENDERING=Prompt each time
AUTHORS=J Procter, M Carstairs, B Soares, K Mourao, TC Ofoegbu, AM Waterhouse, J Engelhardt, LM Lui, A Menard, D Barton, N Sherstnev, D Roldan-Martinez, M Clamp, S Searle, G Barton
SHOW_OV_HIDDEN_AT_START=false
MSF_JVSUFFIX=true
SHOW_DBREFS_TOOLTIP=true
FONT_NAME=SansSerif
STARTUP_FILE=/home/bsoares/Work/git/develop/jalview/examples/uniref50.fa
USE_LEGACY_GAP=false
DEFAULT_FILE_FORMAT=Fasta
VERSION=Test
CLUSTAL_JVSUFFIX=true
GAP_SYMBOL=-
JAVA_CONSOLE_SCREEN_HEIGHT=1328
DEFAULT_COLOUR_NUC=None
FONT_STYLE=plain
USAGESTATS=true
JAVA_COMPILE_VERSION=8
PAD_GAPS=false
ADD_SS_ANN=true
AUTHORFNAMES=Jim Procter, Mungo Carstairs, Ben Soares, Kira Mourao, Tochukwu 'Charles' Ofoegbu, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Anne Menard, Daniel Barton, Natasha Sherstnev, David Roldan-Martinez, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
SHOW_FULLSCREEN=false
ID_ITALICS=true
SHOW_CONSENSUS_LOGO=false
RECENT_FILE=examples/uniref50.fa\t/home/bsoares/Work/git/develop/jalview/examples/uniref50.fa\t/home/bsoares/Downloads/mview-I20240419-154802-0673-19607440-p1m-aln-html.txt\t/home/bsoares/Work/Journal_Club/2024-04-24/examples/jalview_biojs_msaviewer.html\t/home/bsoares/Work/Journal_Club/2024-04-24/examples/jalview_embedded_svg.html\t./estrogenReceptorCdna.fa\t/home/bsoares/Work/git/develop/jalview/examples/exampleFile_2_7.jar\t/home/bsoares/Work/git/develop/jalview/test.jvp\t/home/bsoares/Work/git/develop/jalview/test.fa\t./test/files/annotation_label_width/sample.a2m\t/home/bsoares/Work/git/develop/jalview/test/files/annotation_label_width/sample.a2m
SHOW_QUALITY=true
SHOW_WSDISCOVERY_ERRORS=true
LATEST_VERSION=2.11.3.3
ANNOTATIONCOLOUR_MIN=ffc800
SHOW_JVSUFFIX=true
SCREENGEOMETRY_WIDTH=3840
SHOW_NPFEATS_TOOLTIP=true
MEMORY_JVMMEMMAX=32g
SVG_RENDERING=Prompt each time
VERSION_CHECK=true
WRAP_ALIGNMENT=false
BACKUPFILES_ENABLED=true
RECENT_URL=http\://jalview.org/examples/uniref50.fa\thttps\://jalview.org/examples/plantfdx.fa\thttps\://www.jalview.org/tutorial/schools/Spike-7BNM-Jmol.jvp\thttp\://www.jalview.org/tutorial/schools/Spike-7BNM-Jmol.jvp\thttps\://jalview.org/examples/uniref50.fa\thttps\://www.jalview.org/examples/exampleFile_2_7.jvp
EXPORT_EMBBED_BIOJSON=true
SORT_BY_TREE=false
AUTOSUPERIMPOSE=true
JALVIEW_RSS_WINDOW_SCREEN_X=0
JALVIEW_RSS_WINDOW_SCREEN_Y=0
BLC_JVSUFFIX=true
ANNOTATIONCOLOUR_MAX=ff0000
ANTI_ALIAS=true
JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=577
JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
SHOW_JWS2_SERVICES=true
FONT_SIZE=10
BACKUPFILES_FC_INCLUDE=false
BACKUPFILES_PRESET=1
SHOW_OVERVIEW=false
WSMENU_BYTYPE=false
SHOW_GROUP_CONSERVATION=false
FIGURE_AUTOIDWIDTH=false
STRUCTURE_DISPLAY=JMOL
PILEUP_JVSUFFIX=true
SEQUENCE_LINKS=EMBL-EBI Search|https\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
JALVIEW_RSS_WINDOW_SCREEN_WIDTH=534
SHOW_CONSENSUS_HISTOGRAM=true