package jalview.datamodel;
import static org.testng.Assert.assertEquals;

import org.testng.annotations.Test;

public class AlignmentViewTest
{
  @Test
  public void testGetVisibleAlignmentGapChar()
  {
    SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
    CigarArray ca = new CigarArray(new CigarSimple[] { ss });
    AlignmentView av = new AlignmentView(ca);
    String dots = av.getSequenceStrings('.')[0];
    assertEquals(dots, "A..CDE");
    String dollars = av.getSequenceStrings('$')[0];
    assertEquals(dollars, "A$$CDE");
    assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
            .getSequenceAsString(), "A$$CDE");
  }
}