/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ext.rbvi.chimera;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertTrue;
import java.awt.Color;
import java.util.Arrays;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import org.testng.annotations.Test;
public class ChimeraCommandsTest
{
@Test(groups = { "Functional" })
public void testAddColourRange()
{
Map>>> map = new LinkedHashMap>>>();
ChimeraCommands.addColourRange(map, Color.pink, 1, 2, 4, "A");
ChimeraCommands.addColourRange(map, Color.pink, 1, 8, 8, "A");
ChimeraCommands.addColourRange(map, Color.pink, 1, 5, 7, "B");
ChimeraCommands.addColourRange(map, Color.red, 1, 3, 5, "A");
ChimeraCommands.addColourRange(map, Color.red, 0, 1, 4, "B");
ChimeraCommands.addColourRange(map, Color.orange, 0, 5, 9, "C");
// three colours mapped
assertEquals(3, map.keySet().size());
// Red has two models, Pink and Orange one each
assertEquals(2, map.get(Color.red).keySet().size());
assertEquals(1, map.get(Color.orange).keySet().size());
assertEquals(1, map.get(Color.pink).keySet().size());
// pink model 1 has two chains, red.0 / red.1 / orange.0 one each
assertEquals(2, map.get(Color.pink).get(1).keySet().size());
assertEquals(1, map.get(Color.red).get(0).keySet().size());
assertEquals(1, map.get(Color.red).get(1).keySet().size());
assertEquals(1, map.get(Color.orange).get(0).keySet().size());
// inspect positions
List posList = map.get(Color.pink).get(1).get("A");
assertEquals(2, posList.size());
assertTrue(Arrays.equals(new int[] { 2, 4 }, posList.get(0)));
assertTrue(Arrays.equals(new int[] { 8, 8 }, posList.get(1)));
posList = map.get(Color.pink).get(1).get("B");
assertEquals(1, posList.size());
assertTrue(Arrays.equals(new int[] { 5, 7 }, posList.get(0)));
posList = map.get(Color.red).get(0).get("B");
assertEquals(1, posList.size());
assertTrue(Arrays.equals(new int[] { 1, 4 }, posList.get(0)));
posList = map.get(Color.red).get(1).get("A");
assertEquals(1, posList.size());
assertTrue(Arrays.equals(new int[] { 3, 5 }, posList.get(0)));
posList = map.get(Color.orange).get(0).get("C");
assertEquals(1, posList.size());
assertTrue(Arrays.equals(new int[] { 5, 9 }, posList.get(0)));
}
@Test(groups = { "Functional" })
public void testBuildColourCommands()
{
Map>>> map = new LinkedHashMap>>>();
ChimeraCommands.addColourRange(map, Color.blue, 0, 2, 5, "A");
ChimeraCommands.addColourRange(map, Color.blue, 0, 7, 7, "B");
ChimeraCommands.addColourRange(map, Color.blue, 0, 9, 23, "A");
ChimeraCommands.addColourRange(map, Color.blue, 1, 1, 1, "A");
ChimeraCommands.addColourRange(map, Color.blue, 1, 4, 7, "B");
ChimeraCommands.addColourRange(map, Color.yellow, 1, 8, 8, "A");
ChimeraCommands.addColourRange(map, Color.yellow, 1, 3, 5, "A");
ChimeraCommands.addColourRange(map, Color.red, 0, 3, 5, "A");
// Colours should appear in the Chimera command in the order in which
// they were added; within colour, by model, by chain, and positions as
// added
String command = ChimeraCommands.buildColourCommands(map).get(0);
assertEquals(
"color #0000ff #0:2-5.A,9-23.A,7.B|#1:1.A,4-7.B; color #ffff00 #1:8.A,3-5.A; color #ff0000 #0:3-5.A",
command);
}
}