/*
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.schemes;
import jalview.api.analysis.ScoreModelI;
import java.util.Map;
import org.junit.Test;
public class ScoreMatrixPrinter
{
@Test
public void printAllMatrices()
{
for (Map.Entry sm: ResidueProperties.scoreMatrices.entrySet())
{
System.out.println("Matrix "+sm.getKey());
System.out.println(sm.getValue().toString());
}
}
@Test
public void printHTMLMatrices()
{
for (Map.Entry _sm: ResidueProperties.scoreMatrices.entrySet())
{
if (_sm.getValue() instanceof ScoreMatrix)
{
ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
System.out.println("Matrix "+_sm.getKey());
System.out.println(sm.outputMatrix(true));
}
}
}
}