/*
 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
 * Copyright (C) $$Year-Rel$$ The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.schemes;

import jalview.api.analysis.ScoreModelI;
import jalview.gui.JvOptionPane;

import java.util.Map;

import org.testng.annotations.BeforeClass;

public class ScoreMatrixPrinter
{

  @BeforeClass(alwaysRun = true)
  public void setUpJvOptionPane()
  {
    JvOptionPane.setInteractiveMode(false);
    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
  }

  public void printAllMatrices()
  {
    for (Map.Entry<String, ScoreModelI> sm : ResidueProperties.scoreMatrices
            .entrySet())
    {
      System.out.println("Matrix " + sm.getKey());
      System.out.println(sm.getValue().toString());
    }
  }

  public void printHTMLMatrices()
  {
    for (Map.Entry<String, ScoreModelI> _sm : ResidueProperties.scoreMatrices
            .entrySet())
    {
      if (_sm.getValue() instanceof ScoreMatrix)
      {
        ScoreMatrix sm = (ScoreMatrix) _sm.getValue();
        System.out.println("Matrix " + _sm.getKey());
        System.out.println(sm.outputMatrix(true));
      }
    }
  }

}