/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.structure;
import static org.testng.Assert.assertEquals;
import static org.testng.Assert.assertFalse;
import static org.testng.Assert.assertTrue;
import java.util.List;
import org.testng.annotations.Test;
public class AtomSpecModelTest
{
@Test(groups = "Functional")
public void testGetRanges()
{
AtomSpecModel model = new AtomSpecModel();
assertFalse(model.getModels().iterator().hasNext());
List ranges = model.getRanges("1", "A");
assertTrue(ranges.isEmpty());
model.addRange("1", 12, 14, "A");
assertTrue(model.getRanges("1", "B").isEmpty());
assertTrue(model.getRanges("2", "A").isEmpty());
ranges = model.getRanges("1", "A");
assertEquals(ranges.size(), 1);
int[] range = ranges.get(0);
assertEquals(range[0], 12);
assertEquals(range[1], 14);
/*
* add some ranges; they should be coalesced and
* ordered when retrieved
*/
model.addRange("1", 25, 25, "A");
model.addRange("1", 20, 24, "A");
model.addRange("1", 6, 8, "A");
model.addRange("1", 13, 18, "A");
model.addRange("1", 5, 6, "A");
ranges = model.getRanges("1", "A");
assertEquals(ranges.size(), 3);
range = ranges.get(0);
assertEquals(range[0], 5);
assertEquals(range[1], 8);
range = ranges.get(1);
assertEquals(range[0], 12);
assertEquals(range[1], 18);
range = ranges.get(2);
assertEquals(range[0], 20);
assertEquals(range[1], 25);
}
}