/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.util;
import java.io.File;
import java.util.List;
import org.testng.Assert;
import org.testng.annotations.DataProvider;
import org.testng.annotations.Test;
@Test
public class FileUtilsTest
{
@Test(groups = "Functional", dataProvider = "patternsAndMinNumFiles")
public void testJavaFileGlob(String pattern, int atLeast, int atMost)
{
List files = FileUtils.getFilesFromGlob(pattern);
if (atLeast != -1)
{
Assert.assertTrue(files.size() > atLeast,
"Did not find more than " + atLeast + " files with " + pattern
+ " (found " + files.size() + ")");
}
if (atLeast != -1)
{
Assert.assertTrue(files.size() > atLeast,
"Did not find more than " + atLeast + " files with " + pattern
+ " (found " + files.size() + ")");
}
if (atMost != -1)
{
Assert.assertTrue(files.size() < atMost,
"Did not find fewer than " + atMost + " files with " + pattern
+ " (found " + files.size() + ")");
}
}
@Test(groups = "Functional", dataProvider = "dirnamesAndBasenames")
public void testDirnamesAndBasenames(String filename, String dirname,
String endsWith, String basename, String notInDirname)
{
File file = new File(filename);
String d = FileUtils.getDirname(file);
String b = FileUtils.getBasename(file);
Assert.assertEquals(b, basename);
Assert.assertTrue(d.startsWith(dirname), "getDirname(" + file.getPath()
+ ")=" + d + " didn't start with '" + dirname + "'");
Assert.assertTrue(d.endsWith(endsWith), "getDirname(" + file.getPath()
+ ")=" + d + " didn't end with '" + endsWith + "'");
// ensure dirname doesn't end with basename (which means you can't use same
// filename as dir in tests!)
Assert.assertFalse(d.endsWith(b), "Processed dirname '" + d
+ "' ends with '" + b + "' when it shouldn't");
if (notInDirname != null)
Assert.assertFalse(d.contains(notInDirname), "Processed directory '"
+ d + "' contains '" + notInDirname + "' when it shouldn't");
}
@DataProvider(name = "patternsAndMinNumFiles")
public Object[][] patternsAndMinNumFiles()
{
return new Object[][] { { "src/**/*.java", 900, 100000 },
{ "src/**.java", 900, 100000 },
{ "test/**/*.java", 250, 2500 },
{ "test/**.java", 250, 2500 },
{ "help/**/*.html", 100, 1000 },
{ "test/**/F*.java", 15, 150 },
{ "test/jalview/*/F*.java", 10, 15 }, // 12 at time of writing
{ "test/jalview/**/F*.java", 18, 30 }, // 20 at time of writing
{ "test/jalview/util/F**.java", 1, 5 }, // 2 at time of writing
{ "src/jalview/b*/*.java", 14, 19 }, // 15 at time of writing
{ "src/jalview/b**/*.java", 20, 25 }, // 22 at time of writing
};
}
@DataProvider(name = "dirnamesAndBasenames")
public Object[][] dirnamesAndBasenames()
{
String homeDir = new File(System.getProperty("user.home")).getPath();
return new Object[][] { // -1=startsWith, 0=equals, 1=endsWith
{ "~/hello/sailor", homeDir, "/hello", "sailor", "~" }, //
{ "./examples/uniref50.fa", "./", "examples", "uniref50", "Users" }, //
{ "./examples/uniref50.1.fa", "./", "examples", "uniref50.1",
"Users" }, //
{ "examples/uniref50.fa", "examples", "examples", "uniref50",
".fa" }, //
};
}
@Test(groups = "Functional", dataProvider = "convertWildcardsToPathData")
public void convertWildcardsToPathTest(String value, String wildcard,
String dirname, String basename, String path)
{
Assert.assertEquals(
FileUtils.convertWildcardsToPath(value, wildcard, dirname,
basename),
path, "Conversion of wildcard output path is not right.");
}
@DataProvider(name = "convertWildcardsToPathData")
public Object[][] convertWildcardsToPathData()
{
return new Object[][] {
/*
* cmdline args
* Arg (null if only testing headless)
* String value if there is one (null otherwise)
* boolean value if String value is null
* expected value of isHeadless()
*/
/*
*/
{ "*/*", "*", "{dirname}", "{basename}", "{dirname}/{basename}" },
{ "*/", "*", "{dirname}", "{basename}", "{dirname}/" },
{ "/*", "*", "{dirname}", "{basename}", "/{basename}" },
{ "*", "*", "{dirname}", "{basename}", "{basename}" },
{ "tmp/output/*/file-*.stk", "*", "{dirname}", "{basename}",
"tmp/output/{dirname}/file-{basename}.stk" },
{ "/*.file", "*", "{dirname}", "{basename}", "/{basename}.file" },
{ "*/file.stk", "*", "{dirname}", "{basename}",
"{dirname}/file.stk" },
{ "tmp/abc*def/file.stk", "*", "{dirname}", "{basename}",
"tmp/abc{dirname}def/file.stk" },
{ "a*b/c*d", "*", "{dirname}", "{basename}",
"a{dirname}b/c{basename}d" },
{ "a*b/c", "*", "{dirname}", "{basename}", "a{dirname}b/c" },
{ "a/b*c", "*", "{dirname}", "{basename}", "a/b{basename}c" },
{ "a*b", "*", "{dirname}", "{basename}", "a{basename}b" },
{ "aSTARb/cSTARd", "STAR", "BEFORE", "AFTER", "aBEFOREb/cAFTERd" },
{ "aSTARb/c", "STAR", "BEFORE", "AFTER", "aBEFOREb/c" },
{ "a/bSTARc", "STAR", "BEFORE", "AFTER", "a/bAFTERc" },
{ "aSTARb", "STAR", "BEFORE", "AFTER", "aAFTERb" },
//
};
}
}