done. scoremtx = 1 Gap Penalty = -1.53, +0.00, +0.00 Making a distance matrix .. 1 / 35 11 / 35 21 / 35 31 / 35 done. Constructing a UPGMA tree ... 0 / 35 10 / 35 20 / 35 30 / 35 done. Progressive alignment ... STEP 1 / 34 f STEP 2 / 34 f STEP 3 / 34 f STEP 4 / 34 f STEP 5 / 34 f STEP 6 / 34 f STEP 7 / 34 f STEP 8 / 34 d STEP 9 / 34 d STEP 10 / 34 f STEP 11 / 34 d STEP 12 / 34 f STEP 13 / 34 d STEP 14 / 34 d STEP 15 / 34 d STEP 16 / 34 d STEP 17 / 34 d STEP 18 / 34 d STEP 19 / 34 f STEP 20 / 34 d STEP 21 / 34 d STEP 22 / 34 d STEP 23 / 34 d STEP 24 / 34 d STEP 25 / 34 f STEP 26 / 34 d STEP 27 / 34 d STEP 28 / 34 d Reallocating..done. *alloclen = 2455 STEP 29 / 34 d STEP 30 / 34 d STEP 31 / 34 d STEP 32 / 34 d STEP 33 / 34 d STEP 34 / 34 d done. disttbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000 blosum 62 / kimura 200 done. scoremtx = 1 Gap Penalty = -1.53, +0.00, +0.00 Making a distance matrix .. 0 / 34 10 / 34 20 / 34 30 / 34 done. Constructing a UPGMA tree ... 0 / 35 10 / 35 20 / 35 30 / 35 done. Progressive alignment ... STEP 1 /34 f STEP 2 /34 f STEP 3 /34 f STEP 4 /34 f STEP 5 /34 f STEP 6 /34 f STEP 7 /34 d STEP 8 /34 f STEP 9 /34 d STEP 10 /34 f STEP 11 /34 d STEP 12 /34 d STEP 13 /34 d STEP 14 /34 f STEP 15 /34 d STEP 16 /34 f STEP 17 /34 d STEP 18 /34 d STEP 19 /34 d STEP 20 /34 d STEP 21 /34 f STEP 22 /34 d STEP 23 /34 d STEP 24 /34 d STEP 25 /34 d STEP 26 /34 d STEP 27 /34 d STEP 28 /34 d STEP 29 /34 d STEP 30 /34 d STEP 31 /34 d STEP 32 /34 d STEP 33 /34 d STEP 34 /34 d done. tbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000 comment = FFT-NS-2 done. scoremtx = 1 Strategy: FFT-NS-2 (Fast but rough) Progressive method (guide trees were built 2 times.) If unsure which option to use, try 'mafft --auto input > output'. If the possibility of long gaps can be excluded, add '--ep 0.123'. For more information, see 'mafft --help', 'mafft --man' and the mafft page.