done. scoremtx = 1 Gap Penalty = -1.53, +0.00, +0.00 Making a distance matrix .. 1 / 11 11 / 11 done. Constructing a UPGMA tree ... 0 / 11 done. Progressive alignment ... STEP 1 / 10 f STEP 2 / 10 f STEP 3 / 10 f STEP 4 / 10 d STEP 5 / 10 f STEP 6 / 10 d STEP 7 / 10 d STEP 8 / 10 d STEP 9 / 10 d Reallocating..done. *alloclen = 1464 STEP 10 / 10 d done. disttbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000 blosum 62 / kimura 200 done. scoremtx = 1 Gap Penalty = -1.53, +0.00, +0.00 Making a distance matrix .. 0 / 10 done. Constructing a UPGMA tree ... 0 / 11 done. Progressive alignment ... STEP 1 /10 f STEP 2 /10 f STEP 3 /10 f STEP 4 /10 f STEP 5 /10 d STEP 6 /10 d STEP 7 /10 d STEP 8 /10 d STEP 9 /10 d STEP 10 /10 d done. tbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000 comment = FFT-NS-2 done. scoremtx = 1 Strategy: FFT-NS-2 (Fast but rough) Progressive method (guide trees were built 2 times.) If unsure which option to use, try 'mafft --auto input > output'. If the possibility of long gaps can be excluded, add '--ep 0.123'. For more information, see 'mafft --help', 'mafft --man' and the mafft page.