core/package.js
jalview/api/BuildDetailsI.js
jalview/api/StructureSelectionManagerProvider.js
jalview/bin/ArgsParser.js
jalview/bin/BuildDetails.js
jalview/bin/Cache.js
jalview/bin/Commands.js
jalview/bin/Console.js
jalview/bin/Jalview.js
jalview/bin/JalviewTaskbar.js
jalview/bin/argparser/Arg.js
jalview/bin/argparser/ArgParser.js
jalview/bin/argparser/BootstrapArgs.js
jalview/bin/groovy/JalviewObjectI.js
jalview/datamodel/PDBEntry.js
jalview/gui/APQHandlers.js
jalview/gui/Desktop.js
jalview/gui/IProgressIndicator.js
jalview/gui/JalviewChangeSupport.js
jalview/gui/SplashScreen.js
jalview/io/AlignFile.js
jalview/io/AlignmentFileReaderI.js
jalview/io/AlignmentFileWriterI.js
jalview/io/FileLoader.js
jalview/io/FileParse.js
jalview/io/PIRFile.js
jalview/jbgui/GDesktop.js
jalview/log/JLogger.js
jalview/log/JLoggerI.js
jalview/log/JLoggerLog4j.js
jalview/structure/StructureImportSettings.js
jalview/structure/StructureSelectionManager.js
jalview/urls/IdOrgSettings.js
jalview/util/ChannelProperties.js
jalview/util/HttpUtils.js
jalview/util/MessageManager.js
jalview/util/Platform.js
jalview/util/ShortcutKeyMaskExWrapper.js
jalview/util/ShortcutKeyMaskExWrapper8.js
jalview/util/ShortcutKeyMaskExWrapperI.js
jalview/ws/sifts/SiftsSettings.js
java/applet/AppletContext.js
java/applet/AppletStub.js
java/applet/JSApplet.js
java/awt/AWTEvent.js
java/awt/AWTEventMulticaster.js
java/awt/AWTKeyStroke.js
java/awt/ActiveEvent.js
java/awt/BasicStroke.js
java/awt/BorderLayout.js
java/awt/Color.js
java/awt/Component.js
java/awt/ComponentOrientation.js
java/awt/Container.js
java/awt/ContainerOrderFocusTraversalPolicy.js
java/awt/Cursor.js
java/awt/DefaultFocusTraversalPolicy.js
java/awt/DefaultKeyboardFocusManager.js
java/awt/Dimension.js
java/awt/EventDispatchThread.js
java/awt/EventFilter.js
java/awt/EventQueue.js
java/awt/EventQueueItem.js
java/awt/FlowLayout.js
java/awt/FocusTraversalPolicy.js
java/awt/Font.js
java/awt/FontMetrics.js
java/awt/GraphicsCallback.js
java/awt/GraphicsConfiguration.js
java/awt/GraphicsDevice.js
java/awt/GraphicsEnvironment.js
java/awt/Image.js
java/awt/Insets.js
java/awt/ItemSelectable.js
java/awt/JSComponent.js
java/awt/JSFrame.js
java/awt/JSPanel.js
java/awt/KeyEventDispatcher.js
java/awt/KeyEventPostProcessor.js
java/awt/KeyboardFocusManager.js
java/awt/LayoutManager.js
java/awt/LayoutManager2.js
java/awt/LightweightDispatcher.js
java/awt/Paint.js
java/awt/Point.js
java/awt/Queue.js
java/awt/Rectangle.js
java/awt/RenderingHints.js
java/awt/SentEvent.js
java/awt/Shape.js
java/awt/Stroke.js
java/awt/Taskbar.js
java/awt/Toolkit.js
java/awt/Transparency.js
java/awt/Window.js
java/awt/color/ColorSpace.js
java/awt/datatransfer/ClipboardOwner.js
java/awt/datatransfer/FlavorMap.js
java/awt/datatransfer/FlavorTable.js
java/awt/datatransfer/SystemFlavorMap.js
java/awt/dnd/DropTarget.js
java/awt/dnd/DropTargetContext.js
java/awt/dnd/DropTargetListener.js
java/awt/dnd/peer/DropTargetPeer.js
java/awt/event/AWTEventListener.js
java/awt/event/ActionListener.js
java/awt/event/AdjustmentListener.js
java/awt/event/ComponentEvent.js
java/awt/event/ComponentListener.js
java/awt/event/ContainerEvent.js
java/awt/event/ContainerListener.js
java/awt/event/FocusEvent.js
java/awt/event/FocusListener.js
java/awt/event/HierarchyBoundsListener.js
java/awt/event/HierarchyListener.js
java/awt/event/InputEvent.js
java/awt/event/InputMethodListener.js
java/awt/event/InvocationEvent.js
java/awt/event/ItemListener.js
java/awt/event/KeyEvent.js
java/awt/event/KeyListener.js
java/awt/event/MouseAdapter.js
java/awt/event/MouseEvent.js
java/awt/event/MouseListener.js
java/awt/event/MouseMotionAdapter.js
java/awt/event/MouseMotionListener.js
java/awt/event/MouseWheelListener.js
java/awt/event/TextListener.js
java/awt/event/WindowAdapter.js
java/awt/event/WindowEvent.js
java/awt/event/WindowFocusListener.js
java/awt/event/WindowListener.js
java/awt/event/WindowStateListener.js
java/awt/font/FontRenderContext.js
java/awt/geom/AffineTransform.js
java/awt/geom/Dimension2D.js
java/awt/geom/Point2D.js
java/awt/geom/Rectangle2D.js
java/awt/geom/RectangularShape.js
java/awt/image/BufferedImage.js
java/awt/image/ColorModel.js
java/awt/image/DataBuffer.js
java/awt/image/DataBufferInt.js
java/awt/image/DirectColorModel.js
java/awt/image/ImageConsumer.js
java/awt/image/ImageObserver.js
java/awt/image/PackedColorModel.js
java/awt/image/Raster.js
java/awt/image/RenderedImage.js
java/awt/image/SampleModel.js
java/awt/image/SinglePixelPackedSampleModel.js
java/awt/image/WritableRaster.js
java/awt/peer/ComponentPeer.js
java/awt/peer/ContainerPeer.js
java/awt/peer/FramePeer.js
java/awt/peer/KeyboardFocusManagerPeer.js
java/awt/peer/LightweightPeer.js
java/awt/peer/WindowPeer.js
java/beans/ChangeListenerMap.js
java/beans/PropertyChangeEvent.js
java/beans/PropertyChangeListener.js
java/beans/PropertyChangeSupport.js
java/io/BufferedInputStream.js
java/io/DataInput.js
java/io/DataInputStream.js
java/io/File.js
java/io/FilterInputStream.js
java/lang/AbstractStringBuilder.js
java/lang/ApplicationShutdownHooks.js
java/lang/Class.js
java/lang/Enum.js
java/lang/Iterable.js
java/lang/Runtime.js
java/lang/Shutdown.js
java/lang/StringBuilder.js
java/lang/Thread.js
java/lang/ThreadGroup.js
java/lang/ref/ReferenceQueue.js
java/lang/reflect/AccessibleObject.js
java/lang/reflect/AnnotatedElement.js
java/lang/reflect/Constructor.js
java/net/ContentHandler.js
java/net/HttpURLConnection.js
java/net/URL.js
java/net/URLConnection.js
java/net/URLStreamHandler.js
java/net/URLStreamHandlerFactory.js
java/security/AccessController.js
java/security/PrivilegedAction.js
java/security/PrivilegedExceptionAction.js
java/text/CharacterIterator.js
java/text/DateFormat.js
java/text/DateFormatSymbols.js
java/text/SimpleDateFormat.js
java/text/spi/BreakIteratorProvider.js
java/text/spi/CollatorProvider.js
java/text/spi/DateFormatProvider.js
java/text/spi/DateFormatSymbolsProvider.js
java/text/spi/DecimalFormatSymbolsProvider.js
java/text/spi/NumberFormatProvider.js
java/util/AbstractCollection.js
java/util/AbstractList.js
java/util/AbstractMap.js
java/util/AbstractQueue.js
java/util/AbstractSequentialList.js
java/util/AbstractSet.js
java/util/ArrayList.js
java/util/Arrays.js
java/util/Calendar.js
java/util/Collection.js
java/util/Collections.js
java/util/Comparator.js
java/util/Deque.js
java/util/Dictionary.js
java/util/EnumSet.js
java/util/Enumeration.js
java/util/EventListener.js
java/util/EventObject.js
java/util/Formatter.js
java/util/GregorianCalendar.js
java/util/HashMap.js
java/util/HashSet.js
java/util/Hashtable.js
java/util/IdentityHashMap.js
java/util/Iterator.js
java/util/JumboEnumSet.js
java/util/LinkedHashMap.js
java/util/LinkedList.js
java/util/List.js
java/util/ListIterator.js
java/util/Locale.js
java/util/Map.js
java/util/Objects.js
java/util/Properties.js
java/util/PropertyResourceBundle.js
java/util/Queue.js
java/util/RandomAccess.js
java/util/ServiceLoader.js
java/util/Set.js
java/util/StringTokenizer.js
java/util/TimSort.js
java/util/TimeZone.js
java/util/Vector.js
java/util/concurrent/AbstractExecutorService.js
java/util/concurrent/BlockingQueue.js
java/util/concurrent/Executor.js
java/util/concurrent/ExecutorService.js
java/util/concurrent/Executors.js
java/util/concurrent/LinkedBlockingQueue.js
java/util/concurrent/RejectedExecutionHandler.js
java/util/concurrent/Semaphore.js
java/util/concurrent/ThreadFactory.js
java/util/concurrent/ThreadPoolExecutor.js
java/util/concurrent/TimeUnit.js
java/util/concurrent/locks/AbstractOwnableSynchronizer.js
java/util/concurrent/locks/AbstractQueuedSynchronizer.js
java/util/concurrent/locks/Condition.js
java/util/concurrent/locks/Lock.js
java/util/concurrent/locks/ReentrantLock.js
java/util/regex/Pattern.js
java/util/spi/CalendarDataProvider.js
java/util/spi/CurrencyNameProvider.js
java/util/spi/LocaleNameProvider.js
java/util/spi/TimeZoneNameProvider.js
javajs/api/GenericLineReader.js
javajs/util/AjaxURLConnection.js
javajs/util/AjaxURLStreamHandler.js
javajs/util/AjaxURLStreamHandlerFactory.js
javajs/util/Base64.js
javajs/util/JSThread.js
javajs/util/Lst.js
javajs/util/PT.js
javajs/util/Rdr.js
javajs/util/SB.js
javax/net/ssl/HttpsURLConnection.js
javax/swing/AbstractButton.js
javax/swing/ActionMap.js
javax/swing/ArrayTable.js
javax/swing/BorderFactory.js
javax/swing/BoxLayout.js
javax/swing/ButtonModel.js
javax/swing/ComponentInputMap.js
javax/swing/DefaultButtonModel.js
javax/swing/DefaultDesktopManager.js
javax/swing/DefaultSingleSelectionModel.js
javax/swing/DesktopManager.js
javax/swing/FocusManager.js
javax/swing/Icon.js
javax/swing/ImageIcon.js
javax/swing/InputMap.js
javax/swing/InternalFrameFocusTraversalPolicy.js
javax/swing/JApplet.js
javax/swing/JCheckBoxMenuItem.js
javax/swing/JComponent.js
javax/swing/JDesktopPane.js
javax/swing/JFrame.js
javax/swing/JLayeredPane.js
javax/swing/JMenu.js
javax/swing/JMenuBar.js
javax/swing/JMenuItem.js
javax/swing/JPanel.js
javax/swing/JPopupMenu.js
javax/swing/JRootPane.js
javax/swing/JSeparator.js
javax/swing/JToggleButton.js
javax/swing/KeyStroke.js
javax/swing/KeyboardManager.js
javax/swing/LayoutComparator.js
javax/swing/LayoutFocusTraversalPolicy.js
javax/swing/LookAndFeel.js
javax/swing/MenuElement.js
javax/swing/RepaintManager.js
javax/swing/RootPaneContainer.js
javax/swing/SingleSelectionModel.js
javax/swing/SizeRequirements.js
javax/swing/SortingFocusTraversalPolicy.js
javax/swing/SwingConstants.js
javax/swing/SwingContainerOrderFocusTraversalPolicy.js
javax/swing/SwingDefaultFocusTraversalPolicy.js
javax/swing/SwingPaintEventDispatcher.js
javax/swing/SwingUtilities.js
javax/swing/Timer.js
javax/swing/ToolTipManager.js
javax/swing/UIDefaults.js
javax/swing/UIManager.js
javax/swing/WindowConstants.js
javax/swing/border/AbstractBorder.js
javax/swing/border/BevelBorder.js
javax/swing/border/Border.js
javax/swing/border/CompoundBorder.js
javax/swing/border/EmptyBorder.js
javax/swing/border/EtchedBorder.js
javax/swing/event/AncestorListener.js
javax/swing/event/ChangeEvent.js
javax/swing/event/ChangeListener.js
javax/swing/event/EventListenerList.js
javax/swing/event/HyperlinkListener.js
javax/swing/event/MenuKeyListener.js
javax/swing/event/MenuListener.js
javax/swing/plaf/ActionMapUIResource.js
javax/swing/plaf/BorderUIResource.js
javax/swing/plaf/ColorUIResource.js
javax/swing/plaf/ComponentInputMapUIResource.js
javax/swing/plaf/ComponentUI.js
javax/swing/plaf/DimensionUIResource.js
javax/swing/plaf/FontUIResource.js
javax/swing/plaf/InsetsUIResource.js
javax/swing/plaf/UIResource.js
javax/swing/plaf/basic/BasicBorders.js
sun/awt/AWTAutoShutdown.js
sun/awt/AppContext.js
sun/awt/CausedFocusEvent.js
sun/awt/ComponentFactory.js
sun/awt/EventQueueItem.js
sun/awt/MostRecentKeyValue.js
sun/awt/MostRecentThreadAppContext.js
sun/awt/PaintEventDispatcher.js
sun/awt/PostEventQueue.js
sun/awt/RequestFocusController.js
sun/awt/SunGraphicsCallback.js
sun/awt/SunToolkit.js
sun/awt/image/DataStealer.js
sun/awt/image/IntegerComponentRaster.js
sun/awt/image/IntegerInterleavedRaster.js
sun/awt/image/SunWritableRaster.js
sun/java2d/StateTrackable.js
sun/java2d/StateTrackableDelegate.js
sun/swing/DefaultLookup.js
sun/swing/SwingLazyValue.js
sun/text/resources/en/FormatData_en_GB.js
sun/util/calendar/AbstractCalendar.js
sun/util/calendar/BaseCalendar.js
sun/util/calendar/CalendarDate.js
sun/util/calendar/CalendarSystem.js
sun/util/calendar/CalendarUtils.js
sun/util/calendar/Gregorian.js
sun/util/calendar/ZoneInfo.js
sun/util/calendar/ZoneInfoFile.js
sun/util/locale/BaseLocale.js
sun/util/locale/LanguageTag.js
sun/util/locale/LocaleUtils.js
sun/util/locale/provider/AvailableLanguageTags.js
sun/util/locale/provider/CalendarDataProviderImpl.js
sun/util/locale/provider/CalendarDataUtility.js
sun/util/locale/provider/CalendarProviderImpl.js
sun/util/locale/provider/DateFormatProviderImpl.js
sun/util/locale/provider/LocaleResources.js
sun/util/locale/provider/LocaleServiceProviderPool.js
sun/util/spi/CalendarProvider.js
swingjs/JSApp.js
swingjs/JSAppletThread.js
swingjs/JSAppletViewer.js
swingjs/JSDummyApplet.js
swingjs/JSFocusPeer.js
swingjs/JSFontMetrics.js
swingjs/JSFrameViewer.js
swingjs/JSGraphics2D.js
swingjs/JSGraphicsConfiguration.js
swingjs/JSGraphicsEnvironment.js
swingjs/JSImage.js
swingjs/JSImagekit.js
swingjs/JSMouse.js
swingjs/JSScreenDevice.js
swingjs/JSThreadGroup.js
swingjs/JSToolkit.js
swingjs/JSUtil.js
swingjs/api/Interface.js
swingjs/api/JSUtilI.js
swingjs/api/js/DOMNode.js
swingjs/api/js/HTML5CanvasContext2D.js
swingjs/api/js/JSFunction.js
swingjs/api/js/JSInterface.js
swingjs/jquery/JQueryUI.js
swingjs/plaf/ButtonListener.js
swingjs/plaf/DefaultMenuLayout.js
swingjs/plaf/HTML5LookAndFeel.js
swingjs/plaf/JSAppletUI.js
swingjs/plaf/JSButtonUI.js
swingjs/plaf/JSCheckBoxMenuItemUI.js
swingjs/plaf/JSCheckBoxUI.js
swingjs/plaf/JSComponentUI.js
swingjs/plaf/JSDesktopPaneUI.js
swingjs/plaf/JSEventHandler.js
swingjs/plaf/JSFrameUI.js
swingjs/plaf/JSLayeredPaneUI.js
swingjs/plaf/JSLightweightUI.js
swingjs/plaf/JSMenuBarUI.js
swingjs/plaf/JSMenuItemUI.js
swingjs/plaf/JSMenuUI.js
swingjs/plaf/JSPanelUI.js
swingjs/plaf/JSPopupMenuSeparatorUI.js
swingjs/plaf/JSPopupMenuUI.js
swingjs/plaf/JSRadioButtonUI.js
swingjs/plaf/JSRootPaneUI.js
swingjs/plaf/JSSeparatorUI.js
swingjs/plaf/JSWindowUI.js
swingjs/plaf/LazyActionMap.js
swingjs/plaf/Resizer.js