/*********************************************************************
 * Clustal Omega - Multiple sequence alignment
 *
 * Copyright (C) 2010 University College Dublin
 *
 * Clustal-Omega is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License as
 * published by the Free Software Foundation; either version 2 of the
 * License, or (at your option) any later version.
 *
 * This file is part of Clustal-Omega.
 *
 ********************************************************************/

/*
 *  RCS $Id: hhalign_wrapper.h 241 2011-05-04 14:37:17Z fabian $
 */


extern double
HHalignWrapper(mseq_t *mseq, int *piOrderLR,
               double *pdSeqWeights, int iNodeCount,
               hmm_light *prHMMList, int iHMMCount,
               int iProfProfSeparator, hhalign_para rHhalignPara);