Package compbio.data.sequence

A data model for multiple sequence alignment web services and utility methods that work on the objects of this model.

See:
Description

Class Summary

Alignment	Multiple sequence alignment.
AlignmentMetadata	Alignment metadata e.g.
AnnotatedSequence
ClustalAlignmentUtil	Tools to read and write clustal formated files
FastaSequence	A FASTA formatted sequence.
MultiAnnotatedSequence<T extends Enum<T>>	TODO complete
Score	A value class for AACon annotation results storage
SequenceUtil	Utility class for operations on sequences

Enum Summary

ConservationMethod	Enumeration listing of all the supported methods.
DisemblResultAnnot
Program	The list of programmes that can produce alignments
SMERFSConstraints	Enumeration defining two constraints for SMERFS columns score calculation.

Exception Summary

UnknownFileFormatException

Package compbio.data.sequence Description

A data model for multiple sequence alignment web services and utility methods that work on the objects of this model. Classes in this package have no dependencies to other sources in the project. They form a base layer of JAva Bioinformatics Analysis Web Services.

Version:

1.0 January 2010

Author:

Petr Troshin