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compbio.data.* |
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compbio.data.msa.Category | ||
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public static final java.lang.String |
CATEGORY_ALIGNMENT |
"Alignment" |
public static final java.lang.String |
CATEGORY_CONSERVATION |
"Conservation" |
public static final java.lang.String |
CATEGORY_DISORDER |
"Protein Disorder" |
compbio.data.msa.JABAService | ||
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public static final java.lang.String |
SERVICE_NAMESPACE |
"http://msa.data.compbio/01/01/2010/" |
public static final java.lang.String |
V2_SERVICE_NAMESPACE |
"http://msa.data.compbio/01/12/2010/" |
compbio.data.sequence.ClustalAlignmentUtil | ||
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public static final char |
gapchar |
45 |
compbio.data.sequence.ScoreManager | ||
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public static final java.lang.String |
SINGLE_ENTRY_KEY |
"Alignment" |
compbio.data.sequence.SMERFSConstraints | ||
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public static final double |
DEFAULT_GAP_THRESHOLD |
0.1 |
public static final int |
DEFAULT_WINDOW_SIZE |
7 |
compbio.metadata.* |
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compbio.metadata.PresetManager<T> | ||
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public static final java.lang.String |
LOCAL_ENGINE_LIMIT_PRESET |
"# LocalEngineExecutionLimit #" |
compbio.ws.* |
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compbio.ws.client.WSTester | ||
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public static final java.lang.String |
fastaAlignment |
">Foo\nMTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV--------\n>Bar\nASDAAPEH------------PGIALWLHALE-DAGQAEAAA---AYTRAHQLLPEEPYITAQLLNAVA\n" |
public static final java.lang.String |
fastaInput |
">Foo\nMTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV\n>Bar\nASDAAPEHPGIALWLHALEDAGQAEAAAAYTRAHQLLPEEPYITAQLLNAVA\n" |
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