A C D E F G H I J L M N O P R S T U V W

S

Score - Class in compbio.data.sequence

A value class for AACon annotation results storage

Score(ConservationMethod, List<Float>) - Constructor for class compbio.data.sequence.Score

Instantiate the Score

SequenceUtil - Class in compbio.data.sequence

Utility class for operations on sequences

Services - Enum in compbio.ws.client

List of web services currently supported by JABAWS version 2

setDefaultValue(String) - Method in class compbio.metadata.Option

Sets one of the values defined in optionList as default.

setDefaultValue(String) - Method in class compbio.metadata.Parameter

setDescription(String) - Method in class compbio.metadata.Option

setDescription(String) - Method in class compbio.metadata.Preset

setFurtherDetails(URL) - Method in class compbio.metadata.Option

setMax(String) - Method in class compbio.metadata.ValueConstrain

setMin(String) - Method in class compbio.metadata.ValueConstrain

setName(String) - Method in class compbio.metadata.Option

setName(String) - Method in class compbio.metadata.Preset

setOptionName(String) - Method in class compbio.metadata.Parameter

setOptionNames(Set<String>) - Method in class compbio.metadata.Option

setOptionNames(Set<String>) - Method in class compbio.metadata.Parameter

setOptions(List<String>) - Method in class compbio.metadata.Preset

setOptions(List<Option<T>>) - Method in class compbio.metadata.RunnerConfig

Adds the list of options or parameters to the internal list of options

setParameters(List<Parameter<T>>) - Method in class compbio.metadata.RunnerConfig

Sets the list of parameters as internal list

setPossibleValues(Set<String>) - Method in class compbio.metadata.Parameter

setPresets(List<Preset<T>>) - Method in class compbio.metadata.PresetManager

setPrmSeparator(String) - Method in class compbio.metadata.RunnerConfig

Sets name value separator character

setRequired(boolean) - Method in class compbio.metadata.Option

setRunnerClassName(String) - Method in class compbio.metadata.PresetManager

setRunnerClassName(String) - Method in class compbio.metadata.RunnerConfig

Set the name of a runner class

setType(ValueConstrain.Type) - Method in class compbio.metadata.ValueConstrain

setValidValue(ValueConstrain) - Method in class compbio.metadata.Parameter

setValue(String) - Method in interface compbio.metadata.Argument

Set default values for the parameter or an option

setValue(String) - Method in class compbio.metadata.Option

SMERFSConstraints - Enum in compbio.data.sequence

Enumeration defining two constraints for SMERFS columns score calculation.