A C D E F G H I J L M N O P R S T U V W

C

ChunkHolder - Class in compbio.metadata

Represents a chunk of string data together with the position in a file from where corresponding to of the data.

ChunkHolder(String, long) - Constructor for class compbio.metadata.ChunkHolder

cleanSequence(String) - Static method in class compbio.data.sequence.SequenceUtil

Removes all whitespace chars in the sequence string

ClustalAlignmentUtil - Class in compbio.data.sequence

Tools to read and write clustal formated files

ClustalAlignmentUtil() - Constructor for class compbio.data.sequence.ClustalAlignmentUtil

compbio.ws.client - package compbio.ws.client

connect(String, Jws2Client.Services) - Static method in class compbio.ws.client.Jws2Client

Connects to a web service by the host and the service name

copyAndValidateRConfig(RunnerConfig<?>) - Method in class compbio.metadata.RunnerConfig

countMatchesInSequence(String, String) - Static method in class compbio.data.sequence.FastaSequence