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cancelJob(String)
- Method in interface compbio.data.msa.
MsaWS
Stop running the job
jobId
but leave its output untouched
ChunkHolder
- Class in
compbio.metadata
Represents a chunk of a string data together with the position in a file for the next read operation.
ChunkHolder(String, long)
- Constructor for class compbio.metadata.
ChunkHolder
cleanSequence(String)
- Static method in class compbio.data.sequence.
SequenceUtil
Removes all whitespace chars in the sequence string
closeSilently(Logger, Closeable)
- Static method in class compbio.data.sequence.
SequenceUtil
Closes the Closable and logs the exception if any
ClustalAlignmentUtil
- Class in
compbio.data.sequence
Tools to read and write clustal formated files
ClustalAlignmentUtil()
- Constructor for class compbio.data.sequence.
ClustalAlignmentUtil
compbio.data.msa
- package compbio.data.msa
Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.ws.client
- package compbio.ws.client
A command line client and web services testing client for JAva Bioinformatics Analysis Web Services.
connect(String, Services)
- Static method in class compbio.ws.client.
Jws2Client
Connects to a web service by the host and the service name
copyAndValidateRConfig(RunnerConfig<?>)
- Method in class compbio.metadata.
RunnerConfig
countMatchesInSequence(String, String)
- Static method in class compbio.data.sequence.
FastaSequence
customAlign(List<FastaSequence>, List<Option<T>>)
- Method in interface compbio.data.msa.
MsaWS
Align a list of sequences with options.
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