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IOHelper - Class in compbio.ws.client
 
IOHelper() - Constructor for class compbio.ws.client.IOHelper
 
isAmbiguosProtein(String) - Static method in class compbio.data.sequence.SequenceUtil
Check whether the sequence confirms to amboguous protein sequence
isDefault() - Method in class compbio.metadata.Limit
 
isExceeded(List<FastaSequence>) - Method in class compbio.metadata.Limit
Checks if the number of sequences or their average length in the dataset exceeds this limit.
isNonAmbNucleotideSequence(String) - Static method in class compbio.data.sequence.SequenceUtil
Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one (!) - B char
isNucleotideSequence(FastaSequence) - Static method in class compbio.data.sequence.SequenceUtil
 
isProteinSequence(String) - Static method in class compbio.data.sequence.SequenceUtil
 
isRequired() - Method in class compbio.metadata.Option
Flag that indicated that this option must be specified in the command line for an executable to run
isValidClustalFile(InputStream) - Static method in class compbio.data.sequence.ClustalAlignmentUtil
Please note this method closes the input stream provided as a parameter

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