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id
- Variable in class compbio.data.sequence.
ScoreManager.ScoreHolder
IOHelper
- Class in
compbio.ws.client
IOHelper()
- Constructor for class compbio.ws.client.
IOHelper
isAmbiguosProtein(String)
- Static method in class compbio.data.sequence.
SequenceUtil
Check whether the sequence confirms to amboguous protein sequence
isDefault()
- Method in class compbio.metadata.
Limit
isExceeded(List<FastaSequence>)
- Method in class compbio.metadata.
Limit
Checks if the number of sequences or their average length in the dataset exceeds this limit.
isNonAmbNucleotideSequence(String)
- Static method in class compbio.data.sequence.
SequenceUtil
Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one (!) - B char
isNucleotideSequence(FastaSequence)
- Static method in class compbio.data.sequence.
SequenceUtil
IsOperating
- Class in
compbio.data.msa.jaxws
IsOperating()
- Constructor for class compbio.data.msa.jaxws.
IsOperating
isOperating(Services)
- Method in interface compbio.data.msa.
RegistryWS
Check whether a particular web service is working on this server
IsOperatingResponse
- Class in
compbio.data.msa.jaxws
IsOperatingResponse()
- Constructor for class compbio.data.msa.jaxws.
IsOperatingResponse
isProteinSequence(String)
- Static method in class compbio.data.sequence.
SequenceUtil
isRequired()
- Method in class compbio.metadata.
Option
Flag that indicated that this option must be specified in the command line for an executable to run
isReturn()
- Method in class compbio.data.msa.jaxws.
CancelJobResponse
isReturn()
- Method in class compbio.data.msa.jaxws.
IsOperatingResponse
isValidClustalFile(InputStream)
- Static method in class compbio.data.sequence.
ClustalAlignmentUtil
Please note this method closes the input stream provided as a parameter
IUPRED_INFO
- Static variable in enum compbio.ws.client.
Services
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