Package | Description |
---|---|
compbio.data.sequence |
A data model for multiple sequence alignment web services and utility methods
that work on the objects of this model.
|
compbio.runner |
Utilities commonly used by all runners.
|
compbio.runner.structure |
Modifier and Type | Method and Description |
---|---|
static RNAStructScoreManager |
RNAStructScoreManager.newInstance(java.util.List<java.lang.String> structs,
java.util.List<java.util.TreeSet<Score>> data) |
static RNAStructScoreManager |
RNAStructReader.readRNAStructStream(java.io.InputStream stdout) |
static RNAStructScoreManager |
RNAStructReader.readRNAStructStream(java.io.InputStream stdout,
java.io.InputStream alifold) |
Modifier and Type | Method and Description |
---|---|
static RNAStructScoreManager |
RunnerUtil.readRNAStruct(java.lang.String workDirectory,
java.lang.String structFile) |
Modifier and Type | Method and Description |
---|---|
RNAStructScoreManager |
RNAalifold.getResults(java.lang.String workDirectory) |