Package | Description |
---|---|
compbio.data.msa |
Web Service interfaces for JAva Bioinformatics Analysis Web Services.
|
compbio.data.msa.jaxws | |
compbio.data.sequence |
A data model for multiple sequence alignment web services and utility methods
that work on the objects of this model.
|
compbio.runner.conservation | |
compbio.runner.disorder | |
compbio.ws.client |
A command line client and web services testing client for
JAva Bioinformatics Analysis Web Services.
|
compbio.ws.server |
Modifier and Type | Method and Description |
---|---|
ScoreManager |
SequenceAnnotation.getAnnotation(java.lang.String jobId)
Return the result of the job.
|
Modifier and Type | Field and Description |
---|---|
private ScoreManager |
GetAnnotationResponse._return |
Modifier and Type | Method and Description |
---|---|
ScoreManager |
GetAnnotationResponse.getReturn() |
Modifier and Type | Method and Description |
---|---|
void |
GetAnnotationResponse.setReturn(ScoreManager _return) |
Modifier and Type | Class and Description |
---|---|
class |
RNAStructScoreManager |
Modifier and Type | Method and Description |
---|---|
static ScoreManager |
ScoreManager.newInstance(java.util.Map<java.lang.String,java.util.Set<Score>> data) |
static ScoreManager |
ScoreManager.newInstanceSingleScore(java.util.Map<java.lang.String,Score> seqScoresMap) |
static ScoreManager |
ScoreManager.newInstanceSingleSequence(java.util.Set<Score> data) |
Modifier and Type | Method and Description |
---|---|
ScoreManager |
AACon.getResults(java.lang.String workDirectory) |
Modifier and Type | Method and Description |
---|---|
ScoreManager |
Jronn.getResults(java.lang.String workDirectory) |
ScoreManager |
IUPred.getResults(java.lang.String workDirectory) |
ScoreManager |
Disembl.getResults(java.lang.String workDirectory) |
ScoreManager |
GlobPlot.getResults(java.lang.String workDirectory) |
Modifier and Type | Method and Description |
---|---|
(package private) static ScoreManager |
AAConClient.analize(java.io.File file,
SequenceAnnotation<AAConWS> wsproxy,
Preset<AAConWS> preset,
java.util.List<Option<AAConWS>> customOptions)
Calculate conservation for sequences loaded from the file
|
(package private) static <T> ScoreManager |
Jws2Client.analize(java.io.File file,
SequenceAnnotation<T> wsproxy,
Preset<T> preset,
java.util.List<Option<T>> customOptions)
Calculate conservation for sequences loaded from the file
|
(package private) static <T> ScoreManager |
Jws2Client.analize(java.util.List<FastaSequence> fastalist,
SequenceAnnotation<T> wsproxy,
Preset<T> preset,
java.util.List<Option<T>> customOptions)
Calculate conservation for sequences loaded from a FASTA record list structure
|
Modifier and Type | Method and Description |
---|---|
(package private) static void |
AAConClient.writeOut(java.io.Writer writer,
ScoreManager result)
Outputs AAcon results into the file represented by the outStream
|
(package private) static void |
IOHelper.writeOut(java.io.Writer writer,
ScoreManager results)
Outputs AAcon results into the file represented by the outStream
|
Modifier and Type | Method and Description |
---|---|
ScoreManager |
SequenceAnnotationService.getAnnotation(java.lang.String jobId) |
static <T> ScoreManager |
WSUtil.getAnnotation(java.lang.String jobId,
org.apache.log4j.Logger log) |