Package | Description |
---|---|
compbio.data.msa |
Web Service interfaces for JAva Bioinformatics Analysis Web Services.
|
compbio.data.msa.jaxws | |
compbio.data.sequence |
A data model for multiple sequence alignment web services and utility methods
that work on the objects of this model.
|
compbio.engine | |
compbio.metadata |
A meta-data model for multiple sequence alignment web services
Classes in this package have no dependencies to other sources in the project.
|
compbio.runner |
Utilities commonly used by all runners.
|
compbio.runner.conservation | |
compbio.runner.disorder | |
compbio.runner.msa |
Wrappers for native executables for multiple sequence alignment (msa)
|
compbio.runner.structure | |
compbio.ws.client |
A command line client and web services testing client for
JAva Bioinformatics Analysis Web Services.
|
compbio.ws.server |
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
FastaSequence
A FASTA formatted sequence.
|
ScoreManager |
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
FastaSequence
A FASTA formatted sequence.
|
ScoreManager |
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
AlignmentMetadata
Alignment metadata e.g.
|
ConservationMethod
Enumeration listing of all the supported methods.
|
DisemblResult |
DisorderMethod |
FastaSequence
A FASTA formatted sequence.
|
GlobProtResult |
IUPredResult |
Program
The list of programmes that can produce alignments
|
Range |
RNAStructReader.AlifoldLine |
RNAStructReader.AlifoldResult |
RNAStructReader.RNAOut |
RNAStructScoreManager |
Score
A value class for AACon annotation results storage.
|
ScoreManager |
ScoreManager.ScoreHolder |
SMERFSConstraints
Enumeration defining two constraints for SMERFS columns score calculation.
|
UnknownFileFormatException |
Class and Description |
---|
FastaSequence
A FASTA formatted sequence.
|
Class and Description |
---|
FastaSequence
A FASTA formatted sequence.
|
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
FastaSequence
A FASTA formatted sequence.
|
RNAStructScoreManager |
Score
A value class for AACon annotation results storage.
|
UnknownFileFormatException |
Class and Description |
---|
ScoreManager |
Class and Description |
---|
Score
A value class for AACon annotation results storage.
|
ScoreManager |
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
Class and Description |
---|
RNAStructScoreManager |
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
FastaSequence
A FASTA formatted sequence.
|
ScoreManager |
Class and Description |
---|
Alignment
Multiple sequence alignment.
|
FastaSequence
A FASTA formatted sequence.
|
ScoreManager |