- s - Static variable in class compbio.data.sequence.RNAStructReader
-
- saveRunConfiguration() - Method in class compbio.engine.client.ConfExecutable
-
- saveRunConfiguration() - Method in interface compbio.engine.client.ConfiguredExecutable
-
- sContact - Variable in class compbio.engine.cluster.drmaa.ClusterSession
-
- Score - Class in compbio.data.sequence
-
A value class for AACon annotation results storage.
- Score() - Constructor for class compbio.data.sequence.Score
-
- Score(Enum<?>, ArrayList<Float>) - Constructor for class compbio.data.sequence.Score
-
Instantiate the Score
- Score(Enum<?>, ArrayList<Float>, TreeSet<Range>) - Constructor for class compbio.data.sequence.Score
-
- Score(Enum<?>, TreeSet<Range>) - Constructor for class compbio.data.sequence.Score
-
- Score(Enum<?>, float[]) - Constructor for class compbio.data.sequence.Score
-
- ScoreHolder() - Constructor for class compbio.data.sequence.ScoreManager.ScoreHolder
-
- ScoreHolder(String, Set<Score>) - Constructor for class compbio.data.sequence.ScoreManager.ScoreHolder
-
- ScoreManager - Class in compbio.data.sequence
-
- ScoreManager() - Constructor for class compbio.data.sequence.ScoreManager
-
- ScoreManager(String, Set<Score>) - Constructor for class compbio.data.sequence.ScoreManager
-
- ScoreManager(Map<String, Set<Score>>) - Constructor for class compbio.data.sequence.ScoreManager
-
- ScoreManager.ScoreHolder - Class in compbio.data.sequence
-
- scores - Variable in class compbio.data.sequence.Score
-
- scores - Variable in class compbio.data.sequence.ScoreManager.ScoreHolder
-
- seqLength - Variable in class compbio.metadata.Limit
-
- seqNumber - Variable in class compbio.metadata.Limit
-
- seqP - Static variable in class compbio.data.sequence.RNAStructReader
-
- seqScores - Variable in class compbio.data.sequence.ScoreManager
-
- sequence - Variable in class compbio.data.sequence.FastaSequence
-
Returns the string representation of sequence
- SequenceAnnotation<T> - Interface in compbio.data.msa
-
Interface for tools that results to one or more annotation to sequence(s)
Single, multiple sequences their groups or alignments can be annotated
- SequenceAnnotationService<T> - Class in compbio.ws.server
-
Common methods for all SequenceAnnotation web services
- SequenceAnnotationService(SkeletalExecutable<T>, Logger) - Constructor for class compbio.ws.server.SequenceAnnotationService
-
- sequenceLenghtActual - Variable in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- sequenceLenghtAllowed - Variable in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- sequences - Variable in class compbio.data.sequence.Alignment
-
- SequenceUtil - Class in compbio.data.sequence
-
Utility class for operations on sequences
- SequenceUtil() - Constructor for class compbio.data.sequence.SequenceUtil
-
- serialVersionUID - Static variable in exception compbio.data.sequence.UnknownFileFormatException
-
- serialVersionUID - Static variable in exception compbio.metadata.JobExecutionException
-
Default stable serial for serialization
- serialVersionUID - Static variable in exception compbio.metadata.JobSubmissionException
-
- serialVersionUID - Static variable in exception compbio.metadata.LimitExceededException
-
- serialVersionUID - Static variable in exception compbio.metadata.ResultNotAvailableException
-
Default stable serial for serialization
- serialVersionUID - Static variable in exception compbio.metadata.UnsupportedRuntimeException
-
- serialVersionUID - Static variable in exception compbio.metadata.WrongParameterException
-
Default stable serial for serialization
- SERVER_ADDRESS - Static variable in class compbio.ws.server.GAUtils
-
- service - Variable in class compbio.stat.servlet.ServiceTestResult
-
- service - Variable in class compbio.ws.client.Services.ServiceInfo
-
- SERVICE_NAMESPACE - Static variable in interface compbio.data.msa.JABAService
-
- ServiceInfo() - Constructor for class compbio.ws.client.Services.ServiceInfo
-
- ServiceInfo(Services, String, String, String) - Constructor for class compbio.ws.client.Services.ServiceInfo
-
- servicekey - Static variable in class compbio.ws.client.Constraints
-
- serviceName - Static variable in class compbio.ws.client.AAConClient
-
Web service name
- services - Variable in class compbio.data.msa.Category
-
- Services - Enum in compbio.ws.client
-
List of web services currently supported by JABAWS version 2.1
- Services() - Constructor for enum compbio.ws.client.Services
-
- Services.ServiceInfo - Class in compbio.ws.client
-
- ServiceStatus - Class in compbio.stat.servlet
-
Use cases:
Test web services and display results on the web page
- ServiceStatus() - Constructor for class compbio.stat.servlet.ServiceStatus
-
- ServicesUtil - Class in compbio.ws.client
-
- ServicesUtil() - Constructor for class compbio.ws.client.ServicesUtil
-
- ServiceTestResult - Class in compbio.stat.servlet
-
Value class for test results.
- ServiceTestResult(Services) - Constructor for class compbio.stat.servlet.ServiceTestResult
-
- session - Static variable in class compbio.engine.cluster.drmaa.ClusterRunner
-
- session - Variable in class compbio.engine.cluster.drmaa.ClusterSession
-
- session - Static variable in class compbio.engine.cluster.drmaa.JobRunner
-
- setActualNumberofSequences(int) - Method in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- setAlignment(Alignment) - Method in class compbio.data.msa.jaxws.CustomFold
-
- setAlignment(Alignment) - Method in class compbio.data.msa.jaxws.Fold
-
- setAlignment(Alignment) - Method in class compbio.data.msa.jaxws.PresetFold
-
- setArg0(Services) - Method in class compbio.data.msa.jaxws.GetLastTested
-
- setArg0(Services) - Method in class compbio.data.msa.jaxws.GetLastTestedOn
-
- setArg0(Services) - Method in class compbio.data.msa.jaxws.GetServiceDescription
-
- setArg0(Services) - Method in class compbio.data.msa.jaxws.IsOperating
-
- setArg0(Services) - Method in class compbio.data.msa.jaxws.TestService
-
- setAtPosition(int) - Method in class compbio.engine.client.CommandBuilder.Parameter
-
- setBasicURL(URL) - Method in class compbio.metadata.Option
-
- setDefaultValue(String) - Method in class compbio.metadata.Option
-
Sets one of the values defined in optionList as default.
- setDefaultValue(String) - Method in class compbio.metadata.Parameter
-
- setDelay(long, TimeUnit) - Method in class compbio.engine.FilePuller
-
- setDescription(String) - Method in class compbio.metadata.Option
-
- setDescription(String) - Method in class compbio.metadata.Preset
-
- setEmail(String) - Method in class compbio.engine.cluster.drmaa.ClusterRunner
-
- setEmail(String) - Method in class compbio.engine.cluster.drmaa.JobRunner
-
- setError(String) - Method in class compbio.engine.client.RunConfiguration
-
- setError(String) - Method in class compbio.engine.client.SkeletalExecutable
-
- setExecProvider(Executable.ExecProvider) - Method in class compbio.engine.client.ConfExecutable
-
- SetExecutableFlag - Class in compbio.ws.server
-
Run setexecflag.sh script if executable flag is not set
- SetExecutableFlag() - Constructor for class compbio.ws.server.SetExecutableFlag
-
- setFastaSequences(List<FastaSequence>) - Method in class compbio.data.msa.jaxws.Align
-
- setFastaSequences(List<FastaSequence>) - Method in class compbio.data.msa.jaxws.Analize
-
- setFastaSequences(List<FastaSequence>) - Method in class compbio.data.msa.jaxws.CustomAlign
-
- setFastaSequences(List<FastaSequence>) - Method in class compbio.data.msa.jaxws.CustomAnalize
-
- setFastaSequences(List<FastaSequence>) - Method in class compbio.data.msa.jaxws.PresetAlign
-
- setFastaSequences(List<FastaSequence>) - Method in class compbio.data.msa.jaxws.PresetAnalize
-
- setFirst() - Method in class compbio.engine.client.CommandBuilder.Parameter
-
- setFirst(String) - Method in class compbio.engine.client.CommandBuilder
-
- setFurtherDetails(String) - Method in class compbio.metadata.Option
-
- setInput(String) - Method in class compbio.engine.client.RunConfiguration
-
- setInput(String) - Method in class compbio.engine.client.SkeletalExecutable
-
- setInput(String) - Method in class compbio.runner.conservation.AACon
-
- setInput(String) - Method in class compbio.runner.disorder.Disembl
-
- setInput(String) - Method in class compbio.runner.disorder.GlobPlot
-
- setInput(String) - Method in class compbio.runner.disorder.IUPred
-
- setInput(String) - Method in class compbio.runner.disorder.Jronn
-
- setInput(String) - Method in class compbio.runner.msa.ClustalO
-
- setInput(String) - Method in class compbio.runner.msa.ClustalW
-
- setInput(String) - Method in class compbio.runner.msa.GLprobs
-
- setInput(String) - Method in class compbio.runner.msa.Mafft
-
- setInput(String) - Method in class compbio.runner.msa.MSAprobs
-
- setInput(String) - Method in class compbio.runner.msa.Muscle
-
- setInput(String) - Method in class compbio.runner.msa.Probcons
-
- setInput(String) - Method in class compbio.runner.msa.Tcoffee
-
- setInput(String) - Method in class compbio.runner.structure.RNAalifold
-
- setJobEnvironmentVariables(Map<String, String>) - Method in class compbio.engine.cluster.drmaa.ClusterRunner
-
- setJobEnvironmentVariables(Map<String, String>) - Method in class compbio.engine.cluster.drmaa.JobRunner
-
- setJobId(String) - Method in class compbio.data.msa.jaxws.CancelJob
-
- setJobId(String) - Method in class compbio.data.msa.jaxws.GetAnnotation
-
- setJobId(String) - Method in class compbio.data.msa.jaxws.GetJobStatus
-
- setJobId(String) - Method in class compbio.data.msa.jaxws.GetResult
-
- setJobId(String) - Method in class compbio.data.msa.jaxws.PullExecStatistics
-
- setJobName(String) - Method in class compbio.engine.cluster.drmaa.ClusterRunner
-
- setJobName(String) - Method in class compbio.engine.cluster.drmaa.JobRunner
-
- setLast() - Method in class compbio.engine.client.CommandBuilder.Parameter
-
- setLast(String) - Method in class compbio.engine.client.CommandBuilder
-
- setLast(String, String) - Method in class compbio.engine.client.CommandBuilder
-
- setMax(String) - Method in class compbio.metadata.ValueConstrain
-
- setMessage(String) - Method in class compbio.data.msa.jaxws.JobSubmissionExceptionBean
-
- setMessage(String) - Method in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- setMessage(String) - Method in class compbio.data.msa.jaxws.ResultNotAvailableExceptionBean
-
- setMessage(String) - Method in class compbio.data.msa.jaxws.UnsupportedRuntimeExceptionBean
-
- setMessage(String) - Method in class compbio.data.msa.jaxws.WrongParameterExceptionBean
-
- setMin(String) - Method in class compbio.metadata.ValueConstrain
-
- setName(String) - Method in class compbio.metadata.Option
-
- setName(String) - Method in class compbio.metadata.Preset
-
- setNativeSpecs(Executable<?>) - Method in class compbio.engine.cluster.drmaa.ClusterRunner
-
- setNativeSpecs(Executable<?>) - Method in class compbio.engine.cluster.drmaa.JobRunner
-
- setNCore(int) - Method in class compbio.runner.conservation.AACon
-
- setNCore(int) - Method in class compbio.runner.disorder.Jronn
-
- setNCore(int) - Method in class compbio.runner.msa.ClustalO
-
- setNCore(int) - Method in class compbio.runner.msa.Tcoffee
-
- setNumberOfSequencesAllowed(int) - Method in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- setOptionName(String) - Method in class compbio.metadata.Parameter
-
- setOptionNames(Set<String>) - Method in class compbio.metadata.Option
-
- setOptionNames(Set<String>) - Method in class compbio.metadata.Parameter
-
- setOptions(List<Option>) - Method in class compbio.data.msa.jaxws.CustomAlign
-
- setOptions(List<Option>) - Method in class compbio.data.msa.jaxws.CustomAnalize
-
- setOptions(List<Option>) - Method in class compbio.data.msa.jaxws.CustomFold
-
- setOptions(List<String>) - Method in class compbio.metadata.Preset
-
- setOptions(List<Option<T>>) - Method in class compbio.metadata.RunnerConfig
-
Adds the list of options or parameters to the internal list of options
- setOutput(String) - Method in class compbio.engine.client.RunConfiguration
-
- setOutput(String) - Method in class compbio.engine.client.SkeletalExecutable
-
- setOutput(String) - Method in class compbio.runner.conservation.AACon
-
- setOutput(String) - Method in class compbio.runner.disorder.IUPred
-
- setOutput(String) - Method in class compbio.runner.disorder.Jronn
-
- setOutput(String) - Method in class compbio.runner.msa.ClustalO
-
- setOutput(String) - Method in class compbio.runner.msa.ClustalW
-
- setOutput(String) - Method in class compbio.runner.msa.Muscle
-
- setOutput(String) - Method in class compbio.runner.structure.RNAalifold
-
- setParam(String) - Method in class compbio.engine.client.CommandBuilder
-
- setParam(CommandBuilder.Parameter) - Method in class compbio.engine.client.CommandBuilder
-
- setParam(String, String) - Method in class compbio.engine.client.CommandBuilder
-
- setParameter(String) - Method in class compbio.engine.client.SkeletalExecutable
-
- setParameters(CommandBuilder<?>) - Method in class compbio.engine.client.RunConfiguration
-
- setParameters(List<Parameter<T>>) - Method in class compbio.metadata.RunnerConfig
-
Sets the list of parameters as internal list
- setParams(List<String>) - Method in class compbio.engine.client.CommandBuilder
-
- setPipes(ConfiguredExecutable<?>) - Method in class compbio.engine.cluster.drmaa.ClusterRunner
-
- setPipes(ConfiguredExecutable<?>) - Method in class compbio.engine.cluster.drmaa.JobRunner
-
- setPosition(long) - Method in class compbio.data.msa.jaxws.PullExecStatistics
-
- setPossibleValues(Set<String>) - Method in class compbio.metadata.Parameter
-
- setPreset(Preset) - Method in class compbio.data.msa.jaxws.PresetAlign
-
- setPreset(Preset) - Method in class compbio.data.msa.jaxws.PresetAnalize
-
- setPreset(Preset) - Method in class compbio.data.msa.jaxws.PresetFold
-
- setPresetName(String) - Method in class compbio.data.msa.jaxws.GetLimit
-
- setPresets(List<Preset<T>>) - Method in class compbio.metadata.PresetManager
-
- setPrmSeparator(String) - Method in class compbio.metadata.RunnerConfig
-
Sets name value separator character
- setRanges(TreeSet<Range>) - Method in class compbio.data.sequence.Score
-
- setRequired(boolean) - Method in class compbio.metadata.Option
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.AlignResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.AnalizeResponse
-
- setReturn(boolean) - Method in class compbio.data.msa.jaxws.CancelJobResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.CustomAlignResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.CustomAnalizeResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.CustomFoldResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.FoldResponse
-
- setReturn(ScoreManager) - Method in class compbio.data.msa.jaxws.GetAnnotationResponse
-
- setReturn(JobStatus) - Method in class compbio.data.msa.jaxws.GetJobStatusResponse
-
- setReturn(Date) - Method in class compbio.data.msa.jaxws.GetLastTestedOnResponse
-
- setReturn(int) - Method in class compbio.data.msa.jaxws.GetLastTestedResponse
-
- setReturn(Limit) - Method in class compbio.data.msa.jaxws.GetLimitResponse
-
- setReturn(LimitsManager) - Method in class compbio.data.msa.jaxws.GetLimitsResponse
-
- setReturn(Set<Services>) - Method in class compbio.data.msa.jaxws.GetNonoperatedServicesResponse
-
- setReturn(PresetManager) - Method in class compbio.data.msa.jaxws.GetPresetsResponse
-
- setReturn(Alignment) - Method in class compbio.data.msa.jaxws.GetResultResponse
-
- setReturn(RunnerConfig) - Method in class compbio.data.msa.jaxws.GetRunnerOptionsResponse
-
- setReturn(Set<Category>) - Method in class compbio.data.msa.jaxws.GetServiceCategoriesResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.GetServiceDescriptionResponse
-
- setReturn(Set<Services>) - Method in class compbio.data.msa.jaxws.GetSupportedServicesResponse
-
- setReturn(boolean) - Method in class compbio.data.msa.jaxws.IsOperatingResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.PresetAlignResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.PresetAnalizeResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.PresetFoldResponse
-
- setReturn(ChunkHolder) - Method in class compbio.data.msa.jaxws.PullExecStatisticsResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.TestAllServicesResponse
-
- setReturn(String) - Method in class compbio.data.msa.jaxws.TestServiceResponse
-
- setRunnerClassName(String) - Method in class compbio.metadata.PresetManager
-
- setRunnerClassName(String) - Method in class compbio.metadata.RunnerConfig
-
Set the name of a runner class
- setSequenceLenghtActual(int) - Method in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- setSequenceLenghtAllowed(int) - Method in class compbio.data.msa.jaxws.LimitExceededExceptionBean
-
- setType(ValueConstrain.Type) - Method in class compbio.metadata.ValueConstrain
-
- setupWorkDirectory(ConfExecutable<T>, Executable.ExecProvider) - Static method in class compbio.engine.Configurator
-
- setValidValue(ValueConstrain) - Method in class compbio.metadata.Parameter
-
- setValue(String) - Method in interface compbio.metadata.Argument
-
Set default values for the parameter or an option
- setValue(String) - Method in class compbio.metadata.Option
-
- setWorkDirectory(String) - Method in class compbio.engine.client.ConfExecutable
-
- setWorkDirectory(String) - Method in interface compbio.engine.client.ConfiguredExecutable
-
- SHORT_OUTPUT - Static variable in class compbio.runner.disorder.IUPred
-
- shutDown() - Static method in class compbio.engine.local.LocalExecutorService
-
This stops all executing processes via interruption.
- shutdownDBServer() - Static method in class compbio.stat.collector.StatDB
-
- shutdownService() - Static method in class compbio.engine.local.ExecutableWrapper
-
Stops internal executor service which captures streams of native
executables.
- signal - Variable in class compbio.engine.cluster.drmaa.StatisticManager
-
see man 5 accounting on sun grid engine installed workstation see also
man 2 getrusage
- SimpleWSPublisher - Class in compbio.ws.server
-
Deprecated.
- SimpleWSPublisher(Object, String) - Constructor for class compbio.ws.server.SimpleWSPublisher
-
Deprecated.
- SINGLE_ENTRY_KEY - Static variable in class compbio.data.sequence.ScoreManager
-
- size() - Method in class compbio.engine.client.CommandBuilder
-
- SkeletalExecutable<T> - Class in compbio.engine.client
-
- SkeletalExecutable() - Constructor for class compbio.engine.client.SkeletalExecutable
-
- SkeletalExecutable(String) - Constructor for class compbio.engine.client.SkeletalExecutable
-
- SMERFSConstraints - Enum in compbio.data.sequence
-
Enumeration defining two constraints for SMERFS columns score calculation.
- SMERFSConstraints() - Constructor for enum compbio.data.sequence.SMERFSConstraints
-
- sname - Variable in class compbio.engine.conf.RunnerConfigMarshaller.MySchemaOutputResolver
-
- sortByResultSize() - Method in class compbio.stat.collector.StatProcessor
-
- sortByRuntime() - Method in class compbio.stat.collector.StatProcessor
-
- sortByStartTime() - Method in class compbio.stat.collector.StatProcessor
-
- SPACE - Static variable in class compbio.metadata.Preset
-
- SPACE - Static variable in class compbio.runner.Util
-
- spacer - Static variable in class compbio.data.sequence.ClustalAlignmentUtil
-
- start - Variable in class compbio.stat.collector.JobStat
-
- start_time - Variable in class compbio.engine.cluster.drmaa.StatisticManager
-
- startTime - Variable in class compbio.engine.local.LocalExecutorService
-
- STARTTIME - Static variable in class compbio.stat.collector.JobStat
-
- STAT_FILE - Static variable in class compbio.runner.conservation.AACon
-
- STAT_FILE - Static variable in class compbio.runner.disorder.Jronn
-
- StatCollection - Class in compbio.stat.servlet.util
-
- StatCollection() - Constructor for class compbio.stat.servlet.util.StatCollection
-
- StatCollection.Stattype - Enum in compbio.stat.servlet.util
-
Total number of requests
incomplete abandoned cancelled
- StatDB - Class in compbio.stat.collector
-
The database must be stored in the application root directory and called
"ExecutionStatistic"
- StatDB() - Constructor for class compbio.stat.collector.StatDB
-
- StatDB(boolean) - Constructor for class compbio.stat.collector.StatDB
-
Connect to test database
- statDBName - Static variable in class compbio.stat.collector.StatDB
-
- StatisticCollector - Class in compbio.stat.servlet
-
- StatisticCollector() - Constructor for class compbio.stat.servlet.StatisticCollector
-
- StatisticManager - Class in compbio.engine.cluster.drmaa
-
- StatisticManager(JobInfo) - Constructor for class compbio.engine.cluster.drmaa.StatisticManager
-
- StatProcessor - Class in compbio.stat.collector
-
- StatProcessor(List<JobStat>) - Constructor for class compbio.stat.collector.StatProcessor
-
- stats - Variable in class compbio.stat.collector.ExecutionStatCollector
-
- stats - Variable in class compbio.stat.collector.StatProcessor
-
- Stattype() - Constructor for enum compbio.stat.servlet.util.StatCollection.Stattype
-
- stochBTStructP - Static variable in class compbio.data.sequence.RNAStructReader
-
- StreamGobbler - Class in compbio.engine.local
-
- StreamGobbler(InputStream, OutputStream, StreamGobbler.OutputType) - Constructor for class compbio.engine.local.StreamGobbler
-
- StreamGobbler.OutputType - Enum in compbio.engine.local
-
- strEquals(String, String) - Method in class compbio.engine.client.RunConfiguration
-
- structP - Static variable in class compbio.data.sequence.RNAStructReader
-
- submission_time - Variable in class compbio.engine.cluster.drmaa.StatisticManager
-
- SubmissionManager - Class in compbio.engine
-
Submit jobs for execution
- SubmissionManager() - Constructor for class compbio.engine.SubmissionManager
-
- submitJob(ConfiguredExecutable<?>) - Method in interface compbio.engine.AsyncExecutor
-
Submits job for the execution
Immediate execution is not guaranteed, this method puts the job in the queue.
- submitJob(ConfiguredExecutable<?>) - Method in class compbio.engine.cluster.drmaa.AsyncClusterRunner
-
- submitJob(ConfiguredExecutable<?>) - Method in class compbio.engine.cluster.drmaa.AsyncJobRunner
-
- submitJob() - Method in class compbio.engine.cluster.drmaa.ClusterRunner
-
- submitJob() - Method in class compbio.engine.cluster.drmaa.JobRunner
-
- submitJob(ConfiguredExecutable<?>) - Method in class compbio.engine.local.AsyncLocalRunner
-
- submittedTasks - Static variable in class compbio.engine.SubmissionManager
-
- sumOfTotals(Map<Date, Totals>) - Static method in class compbio.stat.servlet.util.Totals
-
- sumStats(Map<Services, StatProcessor>) - Static method in class compbio.stat.servlet.util.Totals
-
- sweep() - Static method in class compbio.engine.PulledFileCache
-
- SyncExecutor - Interface in compbio.engine
-
Synchronous executor, is an engine to run the Executable synchronously.